Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06760 ATGGTTGAAACCAGACGCAGTTCCTCTTCTTCCAAGCGCGCTCTCTCTTCTTCTCCTTCTCCTTCTCCTTCCAACAACAAAAGATCCAAGGTCTCTGAGGATGCCTCATCCACTCCCCTGCCATCCCCGGCAATTGGGGCTCCTATCAACGAATCTGGAGAACCGCAGTTACGGCCTTCTGATCTGCCAGATACGGCGTCGTTGAAGGCTGTGGATGCAGACAAGTCTCCTTCTGTGCCCGTCGAGGGCGAGGCTTTGGTGCCCCCTCAGTCTCCAGGTGAAACTGCGGAAAAATCAAAGGTGGCTGGTGCGGGGGCGTCGCCTGGTCGGTTGAAGAAACGCCCCACGATAACGATTCCAAAGGTTGCGTGGGGAAAGCTCCTTTCTCAGTTTTCTCAGAATCCTCACCAGTCCATGTGTGATCCTATCTACACTGTTGGTCATGGTCATCAATGTAATTTATGGCTTAAAGATCCCACCCTTAGTAATGTCTTGTGCAAGTTGAGCCACATAGAGCGTGGAGGTTCATCTGTTGCATTACTGGAAATCACAGGGGGTAAAGGTGCTGTTCAAGTTAATGGCAAGACATATCGAAAGAATGCTCGTCTGATTTTAAGTGGGGGTGATGAGGTTGTGTTCGGTTCTTCTGGCAAGCATGCTTATATATTTCAGCAGCTCACACATAATAATATTACTACTGCTGGTGTACCTTCTTCTCTGAGTATTTTAGAAGCCCAAAGTGCTCCAATAAATGGAATGCAAGTTGAAGCTAGATCTGGAGACTCGTCAGCTGTTGCTGGAGCTTCAATATTAGCCTCTCTATCTAATCTTCATAAAGATTTATCTCTCATTTCACCTCCTGCTAAAACTGGCAAAAATGTGCAACAAAACACTGATGTTTCATCACTACCATCTGGCCACAAGGATGATATTCCAGGCATTGAAATGAAAGATGCCACAAATAGCGATGAACTTGCAGGAGTTTTTTCTGCTGAGAAAACTGTTCTGGCATCCTCTACCAATGATAATGAAAATCCTAAGCTTGACGCTGTCGAAATCGATGCCAATGTGGATGCAGATGTTGGGAAAATGACTGCTGCTACCTGCGAATTGAGGCCATTACTGTGCATGCTTTCCGGCTCATGTCCTGAATTTGATTTGAGTGGTAGCATTTCCAAGATATTGGAAGAGCGAAGGGAATTAAGAGAACTCCTCAAAGATGTTGATACCCCAGCAATATTAGCATCTACCAGGCGACAAGCATTTAAGGACAGTTTACAACAGAAAATTCTCAATGCTGAGAATATTGATGTCTCATTTGAAAGTTTCCCATATTATCTAAGTGATACAACAAAGAATGTTTTGATTGCTTCTACGTATATTCATTTGAAGTGCAATGGCTTTGGAAAATATGTTTCAGACCTTCCATCAGTGTCCCCACGGATATTGTTATCTGGTCCTGCAGGTTCGGAAATATATCAGGAGACTTTGTCCAAGGCCCTTGCGAAGCATTTTGGTGCCAAGCTACTAATTGTGGATTCTCTTTCACTGCCTGGTGCAGCACTGTCAAAGGAAATTGATTCCACTAAAGAAAGTTCAAGGCCTGAAAGACCATCCGTGTTTACTAAGAGAAGTACCCCAGCTACTACAGTACAATATAAGAAACCAACTTCTAGTGTTAATGCTGAAATTATAGGTGGATCCACGTTAAGTTCTCAGACTATGCTGAAGCAAGAGGTTTCTACTGCATCATCAAAAGGCAATACTCTTAAAACAGGTGATCGAGTAAAATTTGTTGGTAACATTCCTTGTCCTGTCTCATCGCTACAAAATTATTCTCCAAGGGGACCGAGCTATGGCTCCCGGGGAAAAGTTCTCCTTGCTTTTGAAGATAACGGGTCTTCAAAAATTGGGGTTAGATTTGATAAATCAATTCCTGATGGCAATGATCTTGGAGGCCTTTGTGAAGATGATCGTGGATTCTTTTGTTCTGCAAATCATTTACTACTGGTAGATGGTTCTGGAGGGGATGACTTTGACAGAGTGGCAATTCATGAAATCTTTGAGATTGCCTCTAAGCTGAGTATAAGTGGAGCACTAGTGTTGTTCATTAAAGATATAGAGAAGGCAATGGTTGGGAACTCAGAAATTTTGAAAAGTAAATTTGAAAGCTTGCCTCAGAATGTTGTAGTAATTGGCTCACACATCCAGCTGGACAATCGTAAGGAGAAGACCCAACCTGGCAGCCTTCTGTTTACAAAGTTTGGGAGTAATCAAACAGCATTACTCGATCTTGCTTTCCCGGATAGCTTTAGTAGACTGCATGATAGGAGCAAAGAAACCCCCAAAGTTATGAAGCAACTTAGTCGCCTTTTCCCAAACAGAGTGACAATACAGCTACCTCAGGACGAGGCTTTACTTTCTGATTGGAAGCAGCAGTTAGAACGCGACATTGAAACTATGAAAGCTCATTCTAACATTGCCAGCATTTGCTCAGTTCTCAACAAAATTGGATTGGATTGCCCTGACCTCGAGACTATTTGCATCAAAGATCAAACCCTAACTACTGACAGTGTTGAGAAGATTATTGGCTGGGCTATAAGTTACCATTTTATGCATTCAACTGAAGCTTCTACCAAAGAATCTAAGCTTGTGATATCTGCAGAAAGCATTAAGTATGGGTTTAACATTCTACAGGGCATTCAAAATGAGAGCAAGAACTTGAAAAAATCACTAAAGGATGTGGTTACTGAGAATGAATTTGAGAAAAAACTGCTTGCTGATGTTATTCCACCAACTGATATTGGAGTCAAATTTGATGATATTGGAGCGTTAGAAAATGTGAAGGACACCTTAAAGGAATTGGTCATGCTTCCTCTTCAGAGGCCTGAATTGTTTGGCAAAGGACAGCTGACTAAGCCTTGCAAGGGAATATTGCTTTTTGGGCCTCCTGGCACAGGAAAAACAATGCTTGCAAAGGCTGTAGCAACTGAAGCTGGAGCAAATTTTATTAACATTTCGATGTCCAGCATTACTTCAAAGTGGTTTGGTGAAGGAGAAAAATATGTCAAAGCAGTCTTTTCTCTGGCCAGCAAAATTGCCCCAAGCGTTATTTTTGTTGATGAGGTTGATAGTATGTTAGGGAGACGGGAAAATCCTGGTGAGCATGAGGCTATGCGTAAAATGAAGAATGAGTTTATGGTTAATTGGGATGGTCTGCGTACAAAAGATAGAGAGCGTGTACTTGTTCTTGCTGCTACAAACAGGCCATTTGATCTGGATGAGGCTGTTATTAGGAGGCTTCCGCGAAGATTGATGGTTAGTTTGCCAGATGCAACAAACAGAGAAAAAATTCTTAGAGTCATTTTAGCGAAAGAAGATTTAGCGCCTGATGTTGATTTGGATGCAATAGCAAATATGACTAATGGATATTCAGGAAGTGACCTAAAGAATCTGTGTGTCACTGCAGCTCACTGTCCAATAAGAGAGATCTTGGAGAAGGAAAAGAGGGAGAGAAGCATAGCATTGGCTGAGAACAAACCTTTGCCTGAATTGTGTAGTGGTGCCGACATTCGTCCCTTAAAGATGGAGGATTTTAGATATGCACATGAGCAGGTGTGTGCAAGTGTGTCATCGGAGTCAACAAATATGAATGAGCTACTCCAATGGAATGACCTCTATGGAGAAGGTGGATCGAGAAAAATGAGATCTTTGAGCTACTTCATGTAA 3729 0.4237 MVETRRSSSSSKRALSSSPSPSPSNNKRSKVSEDASSTPLPSPAIGAPINESGEPQLRPSDLPDTASLKAVDADKSPSVPVEGEALVPPQSPGETAEKSKVAGAGASPGRLKKRPTITIPKVAWGKLLSQFSQNPHQSMCDPIYTVGHGHQCNLWLKDPTLSNVLCKLSHIERGGSSVALLEITGGKGAVQVNGKTYRKNARLILSGGDEVVFGSSGKHAYIFQQLTHNNITTAGVPSSLSILEAQSAPINGMQVEARSGDSSAVAGASILASLSNLHKDLSLISPPAKTGKNVQQNTDVSSLPSGHKDDIPGIEMKDATNSDELAGVFSAEKTVLASSTNDNENPKLDAVEIDANVDADVGKMTAATCELRPLLCMLSGSCPEFDLSGSISKILEERRELRELLKDVDTPAILASTRRQAFKDSLQQKILNAENIDVSFESFPYYLSDTTKNVLIASTYIHLKCNGFGKYVSDLPSVSPRILLSGPAGSEIYQETLSKALAKHFGAKLLIVDSLSLPGAALSKEIDSTKESSRPERPSVFTKRSTPATTVQYKKPTSSVNAEIIGGSTLSSQTMLKQEVSTASSKGNTLKTGDRVKFVGNIPCPVSSLQNYSPRGPSYGSRGKVLLAFEDNGSSKIGVRFDKSIPDGNDLGGLCEDDRGFFCSANHLLLVDGSGGDDFDRVAIHEIFEIASKLSISGALVLFIKDIEKAMVGNSEILKSKFESLPQNVVVIGSHIQLDNRKEKTQPGSLLFTKFGSNQTALLDLAFPDSFSRLHDRSKETPKVMKQLSRLFPNRVTIQLPQDEALLSDWKQQLERDIETMKAHSNIASICSVLNKIGLDCPDLETICIKDQTLTTDSVEKIIGWAISYHFMHSTEASTKESKLVISAESIKYGFNILQGIQNESKNLKKSLKDVVTENEFEKKLLADVIPPTDIGVKFDDIGALENVKDTLKELVMLPLQRPELFGKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDRERVLVLAATNRPFDLDEAVIRRLPRRLMVSLPDATNREKILRVILAKEDLAPDVDLDAIANMTNGYSGSDLKNLCVTAAHCPIREILEKEKRERSIALAENKPLPELCSGADIRPLKMEDFRYAHEQVCASVSSESTNMNELLQWNDLYGEGGSRKMRSLSYFM. 1243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06760 1242 Gene3D - 1110 1204 - -
Seca8g06760 1242 Coils Coil 898 918 - -
Seca8g06760 1242 MobiDBLite consensus disorder prediction 1 113 - -
Seca8g06760 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 937 1216 IPR027417 -
Seca8g06760 1242 Pfam AAA+ lid domain 1131 1166 IPR041569 -
Seca8g06760 1242 Pfam ATPase family associated with various cellular activities (AAA) 978 1107 IPR003959 GO:0005524|GO:0016887
Seca8g06760 1242 SMART AAA_5 974 1111 IPR003593 GO:0016887
Seca8g06760 1242 MobiDBLite consensus disorder prediction 1 39 - -
Seca8g06760 1242 CDD RecA-like_ATAD1 941 1107 - -
Seca8g06760 1242 MobiDBLite consensus disorder prediction 539 553 - -
Seca8g06760 1242 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 420 1241 - -
Seca8g06760 1242 ProSitePatterns AAA-protein family signature. 1081 1100 IPR003960 GO:0005524|GO:0016887
Seca8g06760 1242 MobiDBLite consensus disorder prediction 288 304 - -
Seca8g06760 1242 SUPERFAMILY SMAD/FHA domain 125 220 IPR008984 GO:0005515
Seca8g06760 1242 MobiDBLite consensus disorder prediction 525 553 - -
Seca8g06760 1242 CDD FHA 141 224 - -
Seca8g06760 1242 Gene3D - 123 233 - -
Seca8g06760 1242 MobiDBLite consensus disorder prediction 286 311 - -
Seca8g06760 1242 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 936 1112 - -
Seca8g06760 1242 Gene3D - 936 1216 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06760 Seca-Chr8 162407726 162420930 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06760 934 1184 Calmodulin-binding Proteins AT3G56690 32.941 5.14e-32 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06760 - - gmx:100801477 2004.18