Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06756 ATGTCCTCTGCAGATGCAACTTGGATGATTTCTTTCTCATGTTCACCCTCAGATGATACATTTCTTGGAACTTCAACTCTACCCTTGTGGCTGAGATTCATTTTCCTCTCCCCATGTCCTCAGAGAGCTCTGTTATCTGCTGTTGACATCCTACTTTTGTTCACCTTATTTGTGTTTGCTGCCATAAAGCTCTATTCTAGGTTCACTTCCAATGGCACCCCCAACTCTGAGCTCAACAAGCCTCTTATCAGAAATAGAAGAGCTTTTGAAGGAACAACTATTTGGTTTAAGCTAACTCTAACTGCAACGGCTGTTTTAACTATACTCTACACAGTCCCTTGCATTTTGGTATTTAGCAGTTCCACCGAGGTGCCATGGAAGCTAGTTGATGGACTATTTTGGTTGTTTCAGGCCATAACACAATTAGTCCTTGCAATCTTAATCATCCATGAGAAAAGATTTCAAGCTGTTTCTCACCCTTTATCTCTTCGAATATATTGGATTGCAAATTTCGTGATTGTTTCTTTGTTCACTGCTTCTGGGGTTATACGTTTGGTTTCAATGGATGTGGGAGAGGGGAAGTACTTCAGCTTTATGGTAGATGATACCATCTCTTTCATTTCTCTCCCTTTGTCACTTTTTCTCCTTTGTGTTGCGATTAAAGGATCCACCGGGATTATGTCTAGTGAAGAAACGCAACCTCTTATTGATGATGAAACCAAACTATATGATCCAACTTTGACCAAATCCAACGTTACTGGTTTTGCTTCAGCTTCTGGTGTATCCAAGGCCTTTTGGATTTGGTTAAACCCCTTATTGAGTAAAGGGTATGAGTCACCGCTTATTATTGATGAAATTCCAACTCTTTCCCCACAGCATAAAGCTGAGAGGATGTCAGTTATCTTTGAATCAAAATGGCCCAAATCAGAAGAGAGGTCAAAGCACCCTGTTCGAACCACATTGGTTAGGTGCTTCTGGAAGGAGATAGCCTTCACTGCCTTCCTTGCTGTTATTAGGCTAAGTGTCATGTTTGTAGGGCCAGTTCTTATTCAAGATTTTGTTGATTTCACAGCAGGGAAAGGTAGTTCTGTGTATGAAGGATACTACCTTGTTTTGATTCTCCTATGTGCTAAGTTTGTTGAAGTTTTGACAACTCACCATTTCAACTTCAACTCTCAGAAACTTGGGATGCTTATTAGATGCACTCTCATCACTTCTTTGTACAAGAAGGGGTTGAGGCTATCATGCTCTGCTAGGCAGGACCATGGTGTTGGGCCTATTGTGAATTACATGGCTGTTGATACCCAGCAACTATCTGATATGATGCTTCAGTTACATGCTGTGTGGATGATGCCATTTCAGGTTGGTATTGGCTTATTTTTGCTTTACAATTGTCTTGGTGCCGCTGTGATTACGGCATTGGTTGGACTTCTTGGCGTTCTTGCCTTTATTGTGGTGGCTACTCGAAAGAACAAGCGTTACCAGTTTAGTGCAATGATGAATCGTGATTCAAGAATGAAAGCTGTGAATGAGATGCTCAATTACATGCGTGTCATCAAGTTCCAGGCATGGGAAGAGCATTTCAATGACAGGATTTTGGGTTTCCGTAACTCAGAGTTTGGGTGGATTTCCAAGTTTATGTACTCAGTTTGTGGCAATATTATTGTGTTGTGGAGCACCCCATTAATGATATCAACTCTCACATTTGGTACAGCGATTTTCCTTGGGGTTCCACTTGATGCAGCAACGGTTTTCACTACAACAACTGTTTTTAAGATCCTGCAGGAACCTATTAGGACGTTTCCTCAGTCAATGATATCTCTTTCACAAGCACTGGTATCACTTGGGAGGCTAGATAGGTACATGTCTAGCAGGGAATTGTCAGATGATTCAGTTGAGAGAGAAGAAGGTTGTGATGGACACATTGCTGTGGAGGTCAAAGATGGGACCTTTAGGTGGGATGATGATGGCCAAGAGAAGGACTTGAAAAATATCAATTTGAAGATTAATAAAGGGGAGCTCACAGCTATTGTTGGGACTGTGGGGTCAGGGAAATCTTCTCTTCTTGCTTCAATTCTTGGTGAGATGCACAGAGTTTCTGGAAAGGTTCAAGTTTGTGGGAGTACTGCTTATGTTGCACAAACATCTTGGATTCAAAATGGGACCATTGAAGAAAACATTCTCTTTGGTTTACCAATGAACAGGCAGAAGTACAATGAAGTTGTTAGGGTTTGTTGCTTGGAAAAAGACTTGGAAATGATGGAGCATGGTGATCAGACAGAAATTGGTGAGCGTGGGATTAACCTAAGTGGGGGCCAAAAGCAGCGTATACAACTTGCCAGAGCTGTATATCAAGACTGTGATGTATATCTTCTTGATGATGTCTTCAGTGCTGTTGATGCACATACTGGCACTGAAATATTTAAGGAATGCGTGAGGGGAGCTCTAAAAGGCAAGACCATTATTCTTGTAACACACCAAGTAGACTTCCTACATAATGTGGATCTTATAGTGGTGATGAGGGATGGAATGATAGTCCAATCAGGGAAGTACAATGATCTACTCAATTCTGGAATGGATTTTAGTGCTCTGGTAGCAGCACATGAGACATCTATGGAACTAGTAGAACAGGGTGCAGCAGTCATGACTGGTGAAAGTTTGAACAGACCAATGAAATCTCCAAAGGCAGCTTCTAATCACAGAGAAGCCAATGGTGAAAGCAATTCTCTTGACCAACCCAAGTCTGACAAGGAAGGTTCTAAACTCATCAAAGAAGAGGAGAGAGAAACTGGGAAAGTTAGCTTACATATCTATAAACTCTACTGCACTGAGGCTTTTGGGTGGTGGGGCATTACAGTAGTAATCCTTCTTTCTGTGTTATGGCAAGCATCTATGATGGCAAGTGATTATTGGCTGGCATATGAAACCTCAGAAGAGCGTGCTCAATCGTTCAATCCTTCTGTGTTTATATCCATCTACTCAATTATTGCTGTAGTTTCAATTATTTTCATAGTGCTAAGGTCCTACTCTGTTACAATCTTGGGGTTAAAGACGGCACAGATTTTCTTCTCTCAAATTCTTCATAGCATCTTGCATGCTCCCATGTCTTTCTTTGACACTACTCCATCGGGTAGAATTCTAAGCAGGGCATCCACTGATCAGACCAATGTTGATGTCTTTATCCCCTTGTTTCTGAATTTTGTGGTGGCAATGTATATTACAGTGATCAGCATCTTCATAGTCACATGTCAAAATTCTTGGCCAACAACTTTCTTGCTTGTTCCTCTTGTTTGGTTGAACATTTGGTACCGGGGTTATTTTCTTGCTTCGTCACGTGAGTTAACTCGCCTGGATTCAATCACAAAAGCACCTGTTATTCATCATTTCTCTGAAAGCATTTCTGGGGTCATGACAATCCGCGCATTCAAAAAGCAGAATGAATTTTGTTTAGAAAATATTAAACGGGTGAATGCTAATTTGAGAATGGATTTCCACAACTTCAGTGCCAATGCGTGGTTGGGTTTCCGCTTAGAATTGCTCGGAAGCTTAGTTTTTTGCACTTCTGCTATGTTCATGATCATGTTACCCAGCAGTGTCATCAAGCCAGAAAATGTTGGTTTATCTCTCTCTTATGGATTGTCATTAAATGCTGTGATGTTCTGGGCTATATACATGAGCTGTTTCATTGAAAACAAAATGGTATCTGTTGAGAGGATAAAGCAGTTCACAAATATCCCATCAGAAGCATCATGGAACATTAGGGATCGTTTGCCTCCTCCAAATTGGCCCGGTCAAGGTCATGTTGACATCAAAGATTTGCAGGTCAGATATCGTCCAAACACTCCTTTGGTTCTTAAAGGCATTACATTAAGCATTAGTGGAGGAGAAAAGATTGGTGTTGTTGGTCGAACAGGGAGTGGGAAATCAACTTTGATTCAAGTTTTTTTCAGGCTGGTGGAACCTACAGGAGGGAAAATAATCATTGATGGCATTGACATAACTGCCTTAGGACTTCATGATCTTAGATCTCGGTTTGGTATCATTCCTCAGGAGCCTGTCCTTTTTGAAGGAACCGTCAGAAGTAACATTGATCCAACTGGACAGTATACAGATGATGAGATATGGAAGGTAATTATTCCACAATCCACACTGTTTTTGTGA 4161 0.4112 MSSADATWMISFSCSPSDDTFLGTSTLPLWLRFIFLSPCPQRALLSAVDILLLFTLFVFAAIKLYSRFTSNGTPNSELNKPLIRNRRAFEGTTIWFKLTLTATAVLTILYTVPCILVFSSSTEVPWKLVDGLFWLFQAITQLVLAILIIHEKRFQAVSHPLSLRIYWIANFVIVSLFTASGVIRLVSMDVGEGKYFSFMVDDTISFISLPLSLFLLCVAIKGSTGIMSSEETQPLIDDETKLYDPTLTKSNVTGFASASGVSKAFWIWLNPLLSKGYESPLIIDEIPTLSPQHKAERMSVIFESKWPKSEERSKHPVRTTLVRCFWKEIAFTAFLAVIRLSVMFVGPVLIQDFVDFTAGKGSSVYEGYYLVLILLCAKFVEVLTTHHFNFNSQKLGMLIRCTLITSLYKKGLRLSCSARQDHGVGPIVNYMAVDTQQLSDMMLQLHAVWMMPFQVGIGLFLLYNCLGAAVITALVGLLGVLAFIVVATRKNKRYQFSAMMNRDSRMKAVNEMLNYMRVIKFQAWEEHFNDRILGFRNSEFGWISKFMYSVCGNIIVLWSTPLMISTLTFGTAIFLGVPLDAATVFTTTTVFKILQEPIRTFPQSMISLSQALVSLGRLDRYMSSRELSDDSVEREEGCDGHIAVEVKDGTFRWDDDGQEKDLKNINLKINKGELTAIVGTVGSGKSSLLASILGEMHRVSGKVQVCGSTAYVAQTSWIQNGTIEENILFGLPMNRQKYNEVVRVCCLEKDLEMMEHGDQTEIGERGINLSGGQKQRIQLARAVYQDCDVYLLDDVFSAVDAHTGTEIFKECVRGALKGKTIILVTHQVDFLHNVDLIVVMRDGMIVQSGKYNDLLNSGMDFSALVAAHETSMELVEQGAAVMTGESLNRPMKSPKAASNHREANGESNSLDQPKSDKEGSKLIKEEERETGKVSLHIYKLYCTEAFGWWGITVVILLSVLWQASMMASDYWLAYETSEERAQSFNPSVFISIYSIIAVVSIIFIVLRSYSVTILGLKTAQIFFSQILHSILHAPMSFFDTTPSGRILSRASTDQTNVDVFIPLFLNFVVAMYITVISIFIVTCQNSWPTTFLLVPLVWLNIWYRGYFLASSRELTRLDSITKAPVIHHFSESISGVMTIRAFKKQNEFCLENIKRVNANLRMDFHNFSANAWLGFRLELLGSLVFCTSAMFMIMLPSSVIKPENVGLSLSYGLSLNAVMFWAIYMSCFIENKMVSVERIKQFTNIPSEASWNIRDRLPPPNWPGQGHVDIKDLQVRYRPNTPLVLKGITLSISGGEKIGVVGRTGSGKSTLIQVFFRLVEPTGGKIIIDGIDITALGLHDLRSRFGIIPQEPVLFEGTVRSNIDPTGQYTDDEIWKVIIPQSTLFL. 1387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06756 1386 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 330 610 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g06756 1386 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 953 1231 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g06756 1386 SUPERFAMILY ABC transporter transmembrane region 948 1248 IPR036640 GO:0005524|GO:0016020
Seca8g06756 1386 FunFam ATP-dependent bile acid permease, putative 1252 1382 - -
Seca8g06756 1386 Pfam ABC transporter 662 795 IPR003439 GO:0005524
Seca8g06756 1386 MobiDBLite consensus disorder prediction 886 921 - -
Seca8g06756 1386 CDD ABC_6TM_ABCC_D1 331 618 IPR044746 GO:0140359
Seca8g06756 1386 SMART AAA_5 671 852 IPR003593 GO:0016887
Seca8g06756 1386 Gene3D - 1252 1381 IPR027417 -
Seca8g06756 1386 FunFam ABC transporter C family member 5 914 1249 - -
Seca8g06756 1386 Pfam ABC transporter 1285 1377 IPR003439 GO:0005524
Seca8g06756 1386 Gene3D - 621 888 IPR027417 -
Seca8g06756 1386 CDD ABCC_MRP_domain1 644 843 - -
Seca8g06756 1386 Gene3D ABC transporter type 1, transmembrane domain 319 620 IPR036640 GO:0005524|GO:0016020
Seca8g06756 1386 Gene3D ABC transporter type 1, transmembrane domain 914 1249 IPR036640 GO:0005524|GO:0016020
Seca8g06756 1386 CDD ABC_6TM_ABCC_D2 951 1243 IPR044726 GO:0140359
Seca8g06756 1386 FunFam ABC transporter C family member 4 627 886 - -
Seca8g06756 1386 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 644 867 IPR003439 GO:0005524
Seca8g06756 1386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1260 1378 IPR027417 -
Seca8g06756 1386 SUPERFAMILY ABC transporter transmembrane region 321 623 IPR036640 GO:0005524|GO:0016020
Seca8g06756 1386 Pfam ABC transporter transmembrane region 952 1195 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g06756 1386 Pfam ABC transporter transmembrane region 331 597 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca8g06756 1386 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 256 1378 - -
Seca8g06756 1386 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 642 865 IPR027417 -
Seca8g06756 1386 FunFam ABC transporter C family member 10 313 626 - -
Seca8g06756 1386 ProSitePatterns ABC transporters family signature. 769 783 IPR017871 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06756 Seca-Chr8 162302455 162312469 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06756 644 860 Calmodulin-binding Proteins AT2G36910 30.901 2.52e-24 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06756 - K05666 gmx:100793361 2406.71