Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06754 ATGAAATTCTGCAAGACTTACCAGGAGTACATGCGAGGCCAGGAGCAGGAGCTTCCTGGGGTTGGTTTCAAGAAGCTCAAAAAGATCATGAAGAAATGCAGAAGAAGCTCTCAATCCCAGAAAGCCCTTGCCATCAATACTTGCCCTGATCAATGCCCAGGTAATTATTCAGTGTGCGATGGGACCTTTTTCCCTTCCCTTCACAGTGAGATGTCAGAAATTGTAGGGTGCTTTAATCAGCGTGCACAGAGATTGCTGGAGCAACATCTTGCATCTGGCTTCAGAAAGTACTTTCTCATATTGACAGGAAAATTAAAAGGGAATCATACTGCTCTTATTCAAGAAGGCAAAGATCTAGTCATATATGCACTGATAAATGCCATTGCAATTCGCAAAATACTAAAGAAATATGATAAGATTCATTATTCTAAGCAAGGACAATTATTCAAGTCACAAGTCCAGACTATGCACAAGGAAATTCTTCAGAGTCCCTGGCTTATTGAACTTATGGCATTACACATCAACTTAAGGGAAACTGAAGTCCAGTCAAGGAAGGCACCTGCATTGTTTGATGGATGTTCTCTCACTTTTAAGGATGGAAAACCATCACTTACTTGTGAGCTCTTTGATTCCATCAGAATTGATATTGACTTGACTTGCTCTATATGCTTGGATACAGTGTTTGATCCAGTTTCTCTGACTTGCGGCCACATATTCTGCTACAGTTGTGCTTGCTCAGCTGCATCTGTAACTATTGTTGATGGACTTAAGGCAGCAGATCCTAAGGAGAAATGTCCTCTATGCCGAGAGGGAGGAGTTTATGAAGATGCAGTGCACTTGGAAGAATTAAATATTCTGTTAGGACAAAGCTGCAAGGAGTACTGGGAGGAAAGGCTTCAGGTGGAGAGGGTAGAGAGGCTTAAGCAAGCCAAGGAGCATTGGGAAACGCAGTGTAGGGCGTTCATGGGCATCTAA 975 0.4246 MKFCKTYQEYMRGQEQELPGVGFKKLKKIMKKCRRSSQSQKALAINTCPDQCPGNYSVCDGTFFPSLHSEMSEIVGCFNQRAQRLLEQHLASGFRKYFLILTGKLKGNHTALIQEGKDLVIYALINAIAIRKILKKYDKIHYSKQGQLFKSQVQTMHKEILQSPWLIELMALHINLRETEVQSRKAPALFDGCSLTFKDGKPSLTCELFDSIRIDIDLTCSICLDTVFDPVSLTCGHIFCYSCACSAASVTIVDGLKAADPKEKCPLCREGGVYEDAVHLEELNILLGQSCKEYWEERLQVERVERLKQAKEHWETQCRAFMGI. 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06754 324 ProSitePatterns Zinc finger RING-type signature. 235 244 IPR017907 -
Seca8g06754 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BAH1 1 324 IPR033326 -
Seca8g06754 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 209 322 IPR013083 -
Seca8g06754 324 ProSiteProfiles Zinc finger RING-type profile. 220 269 IPR001841 -
Seca8g06754 324 SMART ring_2 220 268 IPR001841 -
Seca8g06754 324 SUPERFAMILY RING/U-box 213 271 - -
Seca8g06754 324 ProSiteProfiles SPX domain profile. 1 151 IPR004331 -
Seca8g06754 324 CDD RING-HC_BAH1-like 210 283 - -
Seca8g06754 324 Pfam Zinc finger, C3HC4 type (RING finger) 217 270 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06754 Seca-Chr8 162286861 162290306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06754 217 269 C3H Transcription Factor Family AT4G28270 41.379 5.84e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06754 K16275 - gmx:100787904 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06754 8 162286861 162290306 Seca8g06754 8 162286861 162290306 ECH