Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06730 ATGGATTCAGAAGCTCAAGCAAGGTATGCCCTTAATGGCAAGGTCATGCTTGCTTCCACCGTCTTTCTCTTCCTCATAATACTCCTTATCATTTTCCTTCACACCTACTGCCACTCCTGCTTCCGTCGCCGCCGCCGTCACAGCCACCGCCGCCGTATTCTAGTTAATAATTCCACCGCCACTTTTAACGAGAGCCTTCACCCTTCCGTTCTCAACTTCCTTCCCACCTTCACTTGCTCCTCCAACACCCACCGCCCGCACCACGACTGCGCCGTGTGCTTGTCGGAGTTCGCCGACGGCGACAAAGGCCGTATCCTTCCAAACTGTAACCACGCTTTCCATTCCCATTGTATTGATGCATGGTTCCGTTCCCACTCCAACTGTCCACTTTGCCGAACCCCGGTCAAACCGGTTCAACTGGCGTCCTCTAGCATCGAACCGGGTCCAGTGGGTTTAACTTTGTCGTCTTTTCCTGCACCGATTGGGTGCCCGAGGAAGTCATTGGAGCTGGTAGGCATAATAGTGGAGATGGAAGACACAAAGAGACTCGGATCCGGGTCACATGCCCCGCATATCGCGGGTTCAGAGGGTCGGATAATATGA 603 0.5357 MDSEAQARYALNGKVMLASTVFLFLIILLIIFLHTYCHSCFRRRRRHSHRRRILVNNSTATFNESLHPSVLNFLPTFTCSSNTHRPHHDCAVCLSEFADGDKGRILPNCNHAFHSHCIDAWFRSHSNCPLCRTPVKPVQLASSSIEPGPVGLTLSSFPAPIGCPRKSLELVGIIVEMEDTKRLGSGSHAPHIAGSEGRII. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06730 200 Pfam Ring finger domain 89 132 IPR001841 -
Seca8g06730 200 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 10 136 IPR044675 -
Seca8g06730 200 SMART ring_2 90 131 IPR001841 -
Seca8g06730 200 CDD RING-H2_EL5-like 89 132 - -
Seca8g06730 200 ProSiteProfiles Zinc finger RING-type profile. 90 132 IPR001841 -
Seca8g06730 200 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 140 IPR013083 -
Seca8g06730 200 SUPERFAMILY RING/U-box 74 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06730 Seca-Chr8 161997287 161997889 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06730 9 136 Rapid Response to Elicitors AT3G16720 44.366 1.20e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06730 - - gmx:102669188 229.18