Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06728 ATGTCGATGTTTCTGATCCTCCTCCTCCTACCGTCATTTTCCTCTCTAGCTTTCGCAGACGTCCCTCCCGCCACTCCTGTCTCTCCTAAAACCGTATGCAAATCCACCCCAGACCCATCCTATTGCAATTCTGTCCTCCCTCCTCAAAACGGCAACGTTTATGATTATGGCCGGTTCTCAGTCAGAAAGTCCATATCACAGGCGAGGGATTTCCTGAACTTAGTTAACAAATATCTCCAACGCCGCTCCACTCTTTCCACCGCCGCCATCCATGCACTCGAAGATTGCCAGACCCTTGGTGAACTCAACTTAGATTTTCTTTTGAGTTCCTTCCAAACTGTGAACAAACAAACTAAGTTCCTACCCAGTTTGCAAGCTGACGATATCCAAACCTTGCTTAGTGCCATTCTAACTAACCAACAAACCTGTCTGGAAGGCCTCCAAGCTTCTGCGTCCGCTTGGAGCGTGAAAAACGGACTCTCTGTTCCACTTTCCAATGACACAAAGCTCTACAGTGTGTCTCTCGCTCTCTTCACAAAAGGTTGGGTTCCCAACAACAAAACCAAAACCAACACCGCATTTCAGCCAACCATGACACAGCTAGGATTCCGAAATGGACGTTTGCCCCTTAAGATGTCAAGTAGAACTCGCGCGATCTACGAGAGCGTGAGTCGGAGAAAGCTCCTTGGGGCTGCTACAGTAGGTAATCACGAGGTTGTGGTGAAAGATATAGTGACGGTGAGCCAAGATGGAAGTGGGAACTTCACCACCATCAACGACGCCATCGCTGCGGCGCCAAACAAGACTTCCTCAACGGCCGGGTACTTCTTGATCTATGTCACTGCAGGTGTTTACGAGGAAAATGTGTCTATTGATAAGAAAAAGACGTACTTGATGATGGTTGGAGATGGCATCAACAAAACAATCATTACCGGCAATCGCAGTGTCGTTGATGGCTGGACAACCTTCAAGTCAGCAACCTTTGCGGTGGTTGGACGAGGATTTGTGGGTGTGAATATGACTATCCGTAACACAGCGGGGCCAGAGAAGCACCAAGCGGTTGCACTTCGAAATGGAGCAGATCTCTCCACGTTTTACAGTTGCAGCTTCGAGGGGTACCAAGACACACTCTATACCCATTCTCTACGACAATTCTACAGGGAATGTGACATCTACGGTACAGTAGATTTCATATTCGGAAACGCTGCAGCTGTGTTCCAGAACTGCAACATGTATCCTCGCCTCCCAATGAGTGGACAATTCAACGCCATAACCGCACAAGGCCGAACCGATCCCAACCAAAACACAGGCACTTCCATCCATAACTGTACCATTAGAGCAGCCGATGACTTGGCTGCAAGCAACGGTGCAGCTGCAACGTATCTGGGAAGGCCTTGGAAGGAGTATTCGAGGACGGTTTATATGCAGAGTTTTATGGACAGTGTGATTGATGGTGCTGGGTGGCGTGAATGGAACGGTGATTTTGCTCTGAGTACTTTGTATTATGCTGAGTTTAACAACACTGGAGCTGGATCTAGCACTGCCAACAGAGTGACATGGCCTGGTTACCACGTGATTAACGCCACCGATGCTGCCAATTTTACTGTCTCTAGTTTCTTGCTTGGAGATGACTGGCTGCCCCAGACTGGAGTCACTTATACCAGTAGCTTGATATAG 1677 0.4842 MSMFLILLLLPSFSSLAFADVPPATPVSPKTVCKSTPDPSYCNSVLPPQNGNVYDYGRFSVRKSISQARDFLNLVNKYLQRRSTLSTAAIHALEDCQTLGELNLDFLLSSFQTVNKQTKFLPSLQADDIQTLLSAILTNQQTCLEGLQASASAWSVKNGLSVPLSNDTKLYSVSLALFTKGWVPNNKTKTNTAFQPTMTQLGFRNGRLPLKMSSRTRAIYESVSRRKLLGAATVGNHEVVVKDIVTVSQDGSGNFTTINDAIAAAPNKTSSTAGYFLIYVTAGVYEENVSIDKKKTYLMMVGDGINKTIITGNRSVVDGWTTFKSATFAVVGRGFVGVNMTIRNTAGPEKHQAVALRNGADLSTFYSCSFEGYQDTLYTHSLRQFYRECDIYGTVDFIFGNAAAVFQNCNMYPRLPMSGQFNAITAQGRTDPNQNTGTSIHNCTIRAADDLAASNGAAATYLGRPWKEYSRTVYMQSFMDSVIDGAGWREWNGDFALSTLYYAEFNNTGAGSSTANRVTWPGYHVINATDAANFTVSSFLLGDDWLPQTGVTYTSSLI. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06728 558 Gene3D - 239 557 IPR012334 -
Seca8g06728 558 NCBIfam pectinesterase inhibitor domain 2 179 IPR006501 GO:0004857
Seca8g06728 558 SUPERFAMILY Pectin lyase-like 241 554 IPR011050 -
Seca8g06728 558 PANTHER PECTINESTERASE 13 547 - -
Seca8g06728 558 FunFam Pectinesterase 238 557 - -
Seca8g06728 558 SMART PMEI_2 24 177 IPR006501 GO:0004857
Seca8g06728 558 FunFam Pectinesterase 30 180 - -
Seca8g06728 558 CDD PMEI-like_3 31 182 - -
Seca8g06728 558 ProSitePatterns Pectinesterase signature 2. 391 400 IPR033131 -
Seca8g06728 558 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 30 180 IPR035513 -
Seca8g06728 558 Pfam Pectinesterase 245 543 IPR000070 GO:0030599|GO:0042545
Seca8g06728 558 Gene3D Invertase/pectin methylesterase inhibitor family protein 29 180 IPR035513 -
Seca8g06728 558 Pfam Plant invertase/pectin methylesterase inhibitor 30 177 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06728 Seca-Chr8 161988342 161990601 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06728 1 558 Carbohydrate Esterase AT4G02330 63.923 0.0 749
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06728 K01051 - gmx:100790729 938.332