Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06726 ATGGCAACAAAACGGAGGCATTTGAATTTCAAAAATGGTCGTTTACCGTTGAAGATGTCAGATCGTGCACGCGCTATCTATGATTCCGCTAGACGCCATGGGAGAAAACTACTTCAAACAGCCACTGACGGTGAAAGCGTTGTGGTAAGTGATATTGTGGTTGTTAGTAAAGATGGAAGCGGAAACTTCACAACTATCAATGATGCAATAGCTGCTGTACCAAACAACAGCGTTGCTAGTAATGGCTACTTCATGATAATTATCACTGAAGGTGTGTATCAAGAGTATGTTTCCATAGACAAAACCAAGAAGTACTTGATGCTTGTTGGAGAAGGAATCAATAGGACCATTATCATTGGCAATCACAATGTCGTTGATGGTTTCACAACATTCAACTCAGCAACATTCGCTGTGGTCGGTCAAGGGTTTGTAGCAGTGAACATAACATTCCGCAACACTGCTGGTCCAAGCAAGCACCAAGCAGTTGCACTAAGAAGTGGAGCCGATATGTCTACCTTCTACAGCTGCAGCTTTGAAGGGTATCAAGATACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATCTATGGCACTGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAATTGCAACATCTATCCCCGCCTTCCCCTTAGTGGACAATTCAATACCATAACAGCTCAAGGTCGAACTGACCCAAGTCAAAACACAGGCACTTCCATACAGAATGCTACTATTAAAGCAGCTGATGAATTGGCTCCAAAAGTTGGTACAGTGCAAACGTACCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTATCATGCAATCCTTCATGGATAGTTTGATAAACCCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGCATTGAGCACATTATACTATGCAGAATATGCTAACACTGGACCCGGTTCAGATACTTCAAATCGAGTGACATGGTCTGGTTATCATGTTATAAACGCTACTGATGCGGTCAATTTTACGGTGTCTAACTTCTTGAGCGGGGATGATTGGCTTTCTCAAACTGGGGTCCCATACTCGAGTGGATTGATATAG 1101 0.4223 MATKRRHLNFKNGRLPLKMSDRARAIYDSARRHGRKLLQTATDGESVVVSDIVVVSKDGSGNFTTINDAIAAVPNNSVASNGYFMIIITEGVYQEYVSIDKTKKYLMLVGEGINRTIIIGNHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGADMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPSQNTGTSIQNATIKAADELAPKVGTVQTYLGRPWKQYSRTVIMQSFMDSLINPAGWHEWSGDFALSTLYYAEYANTGPGSDTSNRVTWSGYHVINATDAVNFTVSNFLSGDDWLSQTGVPYSSGLI. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06726 366 ProSitePatterns Pectinesterase signature 2. 199 208 IPR033131 -
Seca8g06726 366 Gene3D - 47 365 IPR012334 -
Seca8g06726 366 PANTHER PECTINESTERASE 35 355 - -
Seca8g06726 366 SUPERFAMILY Pectin lyase-like 48 364 IPR011050 -
Seca8g06726 366 Pfam Pectinesterase 53 351 IPR000070 GO:0030599|GO:0042545
Seca8g06726 366 FunFam Pectinesterase 46 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06726 Seca-Chr8 161963961 161965212 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06726 5 366 Carbohydrate Esterase AT2G47550 67.956 0.0 526
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06726 K01051 - gmx:100786124 619.772