Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06722 ATGGCTCCCAACAGTTTCTCCATTTCCTATCTGCTTACCATCTTGGTCTTGGCACCATTATCCACAGCAAATGCTGCTTCATCCACAGTGGTTCCTCCAGAAACCATTTGTGGATCCACTGTTGACCCTAGTTATTGCAAAACTGTTCTTGCTAATCAAAATGGCAATATCTATGACTATGGTCGCATCTCTATTCGAAAGTCCATGTCCCAGTCTCGTAATTTCATGAACTTAGTAGACTCATATCTTCAAGGTAGCTCCTCATTGTCTCAATCCACAGTTCGCGCTCTTCAAGACTGCAAATTCCTAGCTGAATTGAGTTTTGAATACTTATCAAACACTTATGCCACAACAAGTCAAGCTAGTGATGTTCTTCCCACTTCTCAAGTTGAAGATTTTGAAACCATTCTTAGTGCTGTTCTGACTAACCAACAGACGTGTTTAGATGGCTTACAAACCACAGCTTCTGATGTAAGAGTGAAGAACGACCTCTCCTCATCGCTCTCCGATGACACGAAGCTTCATAGTGTCACCCTGGCCTTGTTCCTAAAAGGTTGGGTACCCGAGAAGAAAATCATAACATCATGGCAACAAAACGGCAGGCATTTGAATTTCAAAAATGGTCGTTTACCACTGAAGATGTCTAATCATGCACGTTCTATTTATGACTCCGCTAGACGCCATGGTAGAAAACTACTTCAAACTGTCACCGACAATGAAAGCGTTGTTGTAAGTGACATTGTGGTTGTTAGTCAAGATGGAAGCGGAAATTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGTTACTTCATGATATTTATCACCCAAGGTGTGTATCAAGAGTATGTATCCATAGACAAAACCAAGAAATACTTGATGCTTGTTGGAGAAGGAATCAATCGGACCATCATCACTGGCAATCACAATGTCGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTTGTTGCTCAAGGGTTTGTAGCAACTAACATAACATTCCGCAACACTGCTGGACCAAGCAAGATGCAAGCGGTTGCACTAAGAAGTGGAGCCGATATGTCTACCTTTTACAGCTGCAGCTTTGAAGGTTATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATCTATGGCACTGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAATTGCAACATCTATCCCCGCCTTCCACTCAGTGGACAATTCAATACCATAACAGGTCAAGGTCGAACTGACCCAAGTCAAAACACAGGCACTTCCATACAGAATGCTACTATTAAAGCAGCTGATGATTTGGCTCCGAATGTTGGTACGGTGCAAACGTATCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAATCCTTCATGGATAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGCATTGAGCACATTATACTATGCAGAATACGCTAACACTGGACCTGGTTCAGACACTACGAATCGAGTGACGTGGCCTGGTTATCATGTTATCAATGCTACGGATGCAGCCAATTTTACGGTGTCAAACTTCTTGAGCGGGGATAATTGGCTTCCTCAAACTGGTGTCCCATACAACTTCTCCTTTTCCAATATTCTTACTTCCTTTCTCCTTTCCCTCTTGGTCTTGTCATCACTGTCCATAGTAAAGGGTGGTTCATCCTCCATAGTTCCACCAGAAGCCATTTGTGGGTCCACTGTTGATCCTTCTTATTGCAAAACCGTTCTTGCTAATCAAAATGGCAACATCTATGACTATGGTCGCATTTCTATTCGAAAGTCCCTGTCCCAGTCTCGTAAGTTCATGAACTTAGTGGACTCATATCTTCAAGGTAGCTCCTCTTTTTCTCAATCCACAGTTGGCGCTCTTCAAGACTGCAAATTCCTGGCTGAGTTAAGTTTTGAATACTTATCAAACACTTATGCCACAACCAATCAAGCTAGTGATGTTCTTCCCATTTCTCAAGCTGAAAATTTTGAAACCGTTCTCAGTGCCGTTTTGACTAACCAACAGACGTGTTTAGATGGCTTACAAACCACAGCTTCTGATGCAAGACTGAAGAACGACCTCTCCTCATCGCTCTCTGATGACACGAAGCTTCACAGTGTCACCCTGGCCTTGTTCCTAAAAGGTTGGGTGCCTGAGAAGAAAATCAAAACCTCATGGCAACAAAACGGCCGACATTGGAATTTCAAAAATGGTCGTTTACCGTTGAAGATGTCAGATCGTGCACGTGCTATCTATGATTCCTCTAAACGCCATGGGAGGAAACTGCTTCAAACAGCCACGGACGGTGAAAGCGTTGTGGTAAGTGACATTGTGGTTGTTAGTAAAGATGGAAGTGGAAACTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGCTACTTCATGATAATTATCACTGAAGGTGTGTATCAAGAGTATGTTTCCATAGACAAAACCAAGAAGTACTTGATGCTTGTTGGAGAAGGAATCAATCGGACAATCATCACTGGCAATCACAATGTCGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTGGTCGGTCAAGGGTTTGTAGCAGTGAACATAACATTCCGCAACACAGCTGGACCAAGCAAGCACCAAGCAGTTGCACTCAGAAGTGGAGCGGATATGTCCTCCTTCTACAGTTGTAGCTTTGAAGGGTATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATCTATGGCACTGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAATTGCAACATCTATCCCCGCCTTCCCCTCAGTGGACAATTCAATACCATAACAGCTCAAGGTCGAACTGACCCAAGTCAAAACACAGGCACTTCCATACAGAATGCTACTATTAAAGCAGCTGATGATTTGGCTCCGAATGTTGGTACGGTGCAAACGTATCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTGTGATGCAATCCTTCATGGATAGTTTTATAAACCCTGCTGGTTGGCATGAATGGAGTGGTGATTTTGCATTGAGCACATTATACTATGCAGAATATGCTAACACTGGACCTGGTTCAGATACCTCAAACCGAGTGACATGGCCTGGTTATCATGTTATCAATTCTACGGATGCAGCCAATTTTACGGTGTCTAACTTCTTGAGCGGGGATGAGTGGCTTCCCCAAACTGGTGTTCCATACGTGAGTGGATTGATATAG 3357 0.426 MAPNSFSISYLLTILVLAPLSTANAASSTVVPPETICGSTVDPSYCKTVLANQNGNIYDYGRISIRKSMSQSRNFMNLVDSYLQGSSSLSQSTVRALQDCKFLAELSFEYLSNTYATTSQASDVLPTSQVEDFETILSAVLTNQQTCLDGLQTTASDVRVKNDLSSSLSDDTKLHSVTLALFLKGWVPEKKIITSWQQNGRHLNFKNGRLPLKMSNHARSIYDSARRHGRKLLQTVTDNESVVVSDIVVVSQDGSGNFTTINDAIAAAPNNSVASNGYFMIFITQGVYQEYVSIDKTKKYLMLVGEGINRTIITGNHNVVDGFTTFNSATFAVVAQGFVATNITFRNTAGPSKMQAVALRSGADMSTFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITGQGRTDPSQNTGTSIQNATIKAADDLAPNVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTTNRVTWPGYHVINATDAANFTVSNFLSGDNWLPQTGVPYNFSFSNILTSFLLSLLVLSSLSIVKGGSSSIVPPEAICGSTVDPSYCKTVLANQNGNIYDYGRISIRKSLSQSRKFMNLVDSYLQGSSSFSQSTVGALQDCKFLAELSFEYLSNTYATTNQASDVLPISQAENFETVLSAVLTNQQTCLDGLQTTASDARLKNDLSSSLSDDTKLHSVTLALFLKGWVPEKKIKTSWQQNGRHWNFKNGRLPLKMSDRARAIYDSSKRHGRKLLQTATDGESVVVSDIVVVSKDGSGNFTTINDAIAAAPNNSVASNGYFMIIITEGVYQEYVSIDKTKKYLMLVGEGINRTIITGNHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGADMSSFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPSQNTGTSIQNATIKAADDLAPNVGTVQTYLGRPWKQYSRTVVMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTSNRVTWPGYHVINSTDAANFTVSNFLSGDEWLPQTGVPYVSGLI. 1119
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06722 1118 CDD PMEI-like_3 592 743 - -
Seca8g06722 1118 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 35 182 IPR035513 -
Seca8g06722 1118 Gene3D - 242 560 IPR012334 -
Seca8g06722 1118 FunFam Pectinesterase 798 1117 - -
Seca8g06722 1118 Gene3D Invertase/pectin methylesterase inhibitor family protein 34 184 IPR035513 -
Seca8g06722 1118 Gene3D Invertase/pectin methylesterase inhibitor family protein 591 741 IPR035513 -
Seca8g06722 1118 Gene3D - 802 1118 IPR012334 -
Seca8g06722 1118 FunFam Pectinesterase 591 741 - -
Seca8g06722 1118 PANTHER PECTINESTERASE 576 1107 - -
Seca8g06722 1118 SMART PMEI_2 585 738 IPR006501 GO:0004857
Seca8g06722 1118 SMART PMEI_2 28 181 IPR006501 GO:0004857
Seca8g06722 1118 SUPERFAMILY Pectin lyase-like 243 557 IPR011050 -
Seca8g06722 1118 FunFam Pectinesterase 241 560 - -
Seca8g06722 1118 ProSitePatterns Pectinesterase signature 2. 951 960 IPR033131 -
Seca8g06722 1118 Pfam Pectinesterase 248 546 IPR000070 GO:0030599|GO:0042545
Seca8g06722 1118 Pfam Pectinesterase 805 1103 IPR000070 GO:0030599|GO:0042545
Seca8g06722 1118 SUPERFAMILY Pectin lyase-like 800 1116 IPR011050 -
Seca8g06722 1118 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 592 739 IPR035513 -
Seca8g06722 1118 CDD PMEI-like_3 35 186 - -
Seca8g06722 1118 SMART complete 840 1020 IPR006633 -
Seca8g06722 1118 SMART complete 283 463 IPR006633 -
Seca8g06722 1118 Pfam Plant invertase/pectin methylesterase inhibitor 591 738 IPR006501 GO:0004857
Seca8g06722 1118 Pfam Plant invertase/pectin methylesterase inhibitor 34 181 IPR006501 GO:0004857
Seca8g06722 1118 ProSitePatterns Pectinesterase signature 2. 394 403 IPR033131 -
Seca8g06722 1118 FunFam Pectinesterase 34 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06722 Seca-Chr8 161938043 161946942 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06722 6 556 Carbohydrate Esterase AT4G02330 58.319 0.0 668
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06722 K01051 - gmx:100786124 860.522