Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06719 ATGGCTTTTAAGCACTTCTCCTTTTCCAATATTCTTACTTCCTTTCTCCTTTCCCTCTTGATCTTGTCATCACTGTCCATAGCAAAGGGTGGTTCATCCTCCATAGTTCCACCAGAAGCCATTTGTGGGTCCACTGTTGACCCTACTTATTGCAAAACCGTTCTTGCTAATCAAAATGGCAATGTCTATGACTATGGCCGCATTTCTATGCGAAAGTCCCTCTCCCAATCCCGTAAGTTCATGAACTTAGTCGACTCTTACATTCAAGGTAGCTCCTCTTTGTCTCAATCCACAGTTCGCGCCCTTCAAGACTGCAAATTCCTTGCTGAATTGAGTTTTGAATACTTATCAAACACTTATGCCACAACAAATCAAGCTAGTGATGTTCTTCCCATTTCTCAAGCTGAAGATTTTGAAACCATTCTCAGTGCCGTTTTGACTAACCAACAGACATGTTTAGATGGCTTACAGACCACAGCTTCTGATGCAAGACTGAAGAACGACCTCTCCTCATCGCTCTCCGATGACACAAAACTTCACAGTGTCACTCTGGCCCTGTTCCTAAAAGGCTGGGTACCTCAGAAGAAAATCAAAACCTCATGGCAACAAAACGGCCGACATTTGAATTTCAAAAATGGTCGTTTACCATTGAAGATGTCAGATCAGGCACGCGCTATCTATGATTCCGCTAGACGCCATGGTAGAAAGCTACTTCAAACAGCCACTGGCGAAGAAAGCGTTGTGGTAAGTGACATTGTGGTTGTTAGTAAAGATGGAAGTGGAAACTTCACCACTATCAATGATGCAATAGCTGCTGCACCAAACAATAGCGTTGCTAGTAATGGCTACTTCATGATAATTATCACTGAAGGTGTGTATCAAGAGTATGTTTCCATAGACAAAAGCAAGAAGTACTTGATGCTTGTTAGAGAAGGAATCAATCGAACAATCATCACTGGCAATCACAATGTCGTTGATGGTTTCACAACATTCAACTCAGCAACATTTGCTGTGGTCGGTCAAGGGTTTGTAGCAGTGAACATAACATTCCGCAACACAGCTGGACCAAGCAAGCACCAAGCAGTTGCACTCAGAAGTGGAGCGGATATGTCCTCCTTCTACAGTTGTAGCTTTGAAGGGTATCAAGACACATTGTATACACATTCCATGAGGCAGTTTTATAGAGAATGTGATATCTATGGCACTGTTGACTTCATATTTGGAAATGCTGCTGTTGTTTTGCAAAATTGCAACATCTATCCCCGCCTTCCCCTCAGTGGACAATTCAATACCATAACAGCTCAAGGTCGAACTGACCCAAGTCAAAACACAGGCACTTCCATACAGAACGCTACTATTAAAGCAGCTGATGATTTGGCTCCAAATGTTGGTACAGTGCAAACGTATCTTGGGAGACCATGGAAACAATATTCAAGGACAGTTATCATGCAATCCTTCATGGATAGTTTTATAAACCCTGCTGGTTGGCATGAGTGGAGTGGTGATTTTGCATTGAGCACGTTATACTATGCAGAATATGCTAACACGGGACCTGGTTCAGACACTACAAATCGAGTGACGTGGCCCGGTTATCATGTTATCAATTCTACTGATGCAGCCAATTTTACAGTGTCTAACTTCTTGAGCGGGGATGAGTGGCTTCCTCAAACCGGTGTTCCATATTTGAGTGGATTGATATAG 1701 0.428 MAFKHFSFSNILTSFLLSLLILSSLSIAKGGSSSIVPPEAICGSTVDPTYCKTVLANQNGNVYDYGRISMRKSLSQSRKFMNLVDSYIQGSSSLSQSTVRALQDCKFLAELSFEYLSNTYATTNQASDVLPISQAEDFETILSAVLTNQQTCLDGLQTTASDARLKNDLSSSLSDDTKLHSVTLALFLKGWVPQKKIKTSWQQNGRHLNFKNGRLPLKMSDQARAIYDSARRHGRKLLQTATGEESVVVSDIVVVSKDGSGNFTTINDAIAAAPNNSVASNGYFMIIITEGVYQEYVSIDKSKKYLMLVREGINRTIITGNHNVVDGFTTFNSATFAVVGQGFVAVNITFRNTAGPSKHQAVALRSGADMSSFYSCSFEGYQDTLYTHSMRQFYRECDIYGTVDFIFGNAAVVLQNCNIYPRLPLSGQFNTITAQGRTDPSQNTGTSIQNATIKAADDLAPNVGTVQTYLGRPWKQYSRTVIMQSFMDSFINPAGWHEWSGDFALSTLYYAEYANTGPGSDTTNRVTWPGYHVINSTDAANFTVSNFLSGDEWLPQTGVPYLSGLI. 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06719 566 Pfam Plant invertase/pectin methylesterase inhibitor 39 186 IPR006501 GO:0004857
Seca8g06719 566 SMART PMEI_2 33 186 IPR006501 GO:0004857
Seca8g06719 566 PANTHER PECTINESTERASE 25 555 - -
Seca8g06719 566 CDD PMEI-like_3 40 191 - -
Seca8g06719 566 Gene3D Invertase/pectin methylesterase inhibitor family protein 39 189 IPR035513 -
Seca8g06719 566 FunFam Pectinesterase 39 189 - -
Seca8g06719 566 SUPERFAMILY Pectin lyase-like 248 564 IPR011050 -
Seca8g06719 566 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 40 187 IPR035513 -
Seca8g06719 566 FunFam Pectinesterase 246 565 - -
Seca8g06719 566 Pfam Pectinesterase 253 551 IPR000070 GO:0030599|GO:0042545
Seca8g06719 566 ProSitePatterns Pectinesterase signature 2. 399 408 IPR033131 -
Seca8g06719 566 Gene3D - 250 566 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06719 Seca-Chr8 161915530 161917357 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06719 8 566 Carbohydrate Esterase AT1G02810 58.662 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06719 K01051 - gmx:100786124 853.588