Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06718 ATGAATAACCTCAGAAGAACAGCACCCTTTCTGATTCTTGTATTCATTCTGACCATAGTTTTTCCTCTACTCTTTTTGGGAACCAATTTCACTCACACCCTAGCATCATCAACACATGCCCAAGAAAAACACCTCCATTATTTCCAAAAGCACATACAAGTAGCCCATTCTACATGCCAAGGAACACTCTACCCAGACCTATGTGTCTCAACCCTATCCACCTTCCCAGATCTTGCTTCAAAATCTGTTCCACAAATAATCTCCACCATGGTCAATCACACTGTATCAGAGGTGAGATCATCATCCTACAACTGCAGTGGCCTTAAGAAGAAGCTAAAAAATCTCAACCCACTTGAACAGAGAGCTCTGGATGATTGTCTCAAACTGTTTGATGACACCACTGCAGAGCTCAAAACCACCATTGCTGACCTTTCAAAAACCACAATAGGCTCTAAGAGACACCATGACTTGCAGACTCTGCTAAGTGGCGCAATGACCAACTTGTACACGTGCCTAGATGGATTTGCTTACAGCAAAGGAAACGTGAGAGACAGATTCCAAGAGAAGCTGCTTGAGATATCACATCACGTTAGTAACTCCTTGGCCATGTTGAAGAAAGTGCCTGGAGGAAAGAAAACGTCCAATTCTGAAGTTTTCCCTGAATATGGAAAAATGAAAAAAGGGTTCCCCTCTTGGGTTTCCCCTAAAGACAGAAAGCTCCTCCAAGCTTCTGTGAATGAGACAAAGTTTGATCTTGTCGTTGCCAAAGATGGCAGTGGCAATTTCACCACTATTGGGGAAGCTGTGGCTGCGGCTCCTAACTCCAGTGAAACCAGGTTTGTGATACACATAAAGGCTGGGGGATACTTTGAGAATGTGGAAGTGATCAGGAAGAAGAGCAATCTGATGTTTGTTGGAGATGGAATTGGAAAGACGGTAGTGAAAGCCAGTAGGAATGTTGTGGATGGGTGGACCACTTTCCAATCAGCTACTGTTGCTGTGGTAGGAGACAGATTCATAGCGAAGGGTATAACTTTTGAGAACTCAGCAGGGCCTGACAAACACCAAGCAGTGGCCCTGAGGAGTGGTGCAGACTTCTCAGCGTTCTACCAATGCAGCTTTGTTGGCTACCAAGACACTCTCTACGTCCATTCCCTACGCCAATTCTATCGTGAATGCGACATTTATGGAACTGTTGACTTCATTTTTGGCAACGCAGCCGTTGTCTTCCAAAACTGCAACATATACGCACGCAAGCCAAATGAAAATCAGAAGAACTTGTTCACTGCACAAGGCAGAGAGGACCCTAACCAAAACACTGGCATATCAATCTTGAACTGTAAGATAGCAGCTGCTGCAGATTTAATCCCAGTGAAATCATCATTCAAGAGCTACTTAGGTCGTCCTTGGAAATTATATTCAAGGACGGTTTATCTCAAATCTTACATGGAGGATCTGATAGATCCAGCAGGGTGGTTGGAATGGAATGATACATTTGCGTTGGATACATTGTATTATGGAGAGTACATGAATAGGGGTCCAGGTTCAAACACAAGTGCTAGAGTTAAGTGGCCAGGTTATAGGGTCATTAATAGCTCCACTGAGGCAAGCCAATTCACAGTTGGACAGTTTATACAGGGGAATGAATGGTTGAACTCCACTGGCATTCCATTCTTCTCTGAGTTGAGTTGA 1692 0.4397 MNNLRRTAPFLILVFILTIVFPLLFLGTNFTHTLASSTHAQEKHLHYFQKHIQVAHSTCQGTLYPDLCVSTLSTFPDLASKSVPQIISTMVNHTVSEVRSSSYNCSGLKKKLKNLNPLEQRALDDCLKLFDDTTAELKTTIADLSKTTIGSKRHHDLQTLLSGAMTNLYTCLDGFAYSKGNVRDRFQEKLLEISHHVSNSLAMLKKVPGGKKTSNSEVFPEYGKMKKGFPSWVSPKDRKLLQASVNETKFDLVVAKDGSGNFTTIGEAVAAAPNSSETRFVIHIKAGGYFENVEVIRKKSNLMFVGDGIGKTVVKASRNVVDGWTTFQSATVAVVGDRFIAKGITFENSAGPDKHQAVALRSGADFSAFYQCSFVGYQDTLYVHSLRQFYRECDIYGTVDFIFGNAAVVFQNCNIYARKPNENQKNLFTAQGREDPNQNTGISILNCKIAAAADLIPVKSSFKSYLGRPWKLYSRTVYLKSYMEDLIDPAGWLEWNDTFALDTLYYGEYMNRGPGSNTSARVKWPGYRVINSSTEASQFTVGQFIQGNEWLNSTGIPFFSELS. 564
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06718 563 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 56 207 IPR035513 -
Seca8g06718 563 Pfam Pectinesterase 251 548 IPR000070 GO:0030599|GO:0042545
Seca8g06718 563 Gene3D Invertase/pectin methylesterase inhibitor family protein 53 209 IPR035513 -
Seca8g06718 563 Pfam Plant invertase/pectin methylesterase inhibitor 56 203 IPR006501 GO:0004857
Seca8g06718 563 Gene3D - 245 562 IPR012334 -
Seca8g06718 563 SUPERFAMILY Pectin lyase-like 249 559 IPR011050 -
Seca8g06718 563 FunFam Pectinesterase 245 562 - -
Seca8g06718 563 NCBIfam pectinesterase inhibitor domain 36 206 IPR006501 GO:0004857
Seca8g06718 563 PANTHER PECTINESTERASE 21 552 - -
Seca8g06718 563 CDD PMEI-like_3 57 209 - -
Seca8g06718 563 ProSitePatterns Pectinesterase signature 2. 395 404 IPR033131 -
Seca8g06718 563 SMART PMEI_2 50 203 IPR006501 GO:0004857
Seca8g06718 563 FunFam Pectinesterase 52 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06718 Seca-Chr8 161900037 161908140 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06718 79 562 Carbohydrate Esterase AT4G02320 57.948 0.0 589
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06718 K01051 - gmx:100802881 948.732