Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06709 ATGTGTGGCGGTGCTATCATCGCTGATTTCATTCCTCATCGTGGAGGTCGCCGTCTCACGGCCTCTGAGCTTTGGCCAAATTCATTCGGTAAGAAGAATGATTCAGACTTCGATTATTCTCATGTGCCTCATCAACAACCATCCACTCTCAAAAGATCTCAACCTTCCACAGCAGTTGAGAAGCCGGTGAAAAGGCAGAGAAAAAACCTCTACAGAGGGATTCGCCAGCGTCCTTGGGGTAAATGGGCTGCGGAGATTCGTGATCCTAGAAAAGGGGTTCGTGTTTGGCTTGGTACCTTCAACACTGCTGAAGAAGCTGCTAGGGCCTATGATTGTGAGGCTCGAAAAATCCGTGGTGAGAAAGCCAAGGTGAATTTCCCAAACGAAGACGATCAATATTCTATTCAAGCTCGTCGTAGAAATCCACCCCTTCCAGTTCGACCCCCAAACCCTCCTCCCCTGTATCAACAACAATATCGTTGCGATCTCAATAATGCTCCTAAAAACCTGAACTTGGAGTTTGGTTATGATCTGAACCAAGCTGGGTCATTTGCTTCCCATCTGGGTACTGTCAACTCTGACTCTGTTATTGTATCCGGTGATGAAAATTCTGAATATGGGTCAGGGTTAGGGTCAGGTCCAGGTTCAGGTTCAGGTTCAGAGGGTGCTGATTATTCAGCAACAGAGTTCATGGGCTCCAATCAGCATGCGAGCGGTTATTTTGCTGGTATGATGAAGACGAATGAGAAAGAAACAGAGCAAGAGCAAAAAACAGAGGTGATTGAAGCAGAAGCTGCTAAGAGCGAAGTGCAGGAACTATCAGAAGAGTTGATGGCGTATGAAAACTACATGAAGTTTTATCAGATTCCTTACTATGATGGACAATCGGTGGCGCATAATAATGTTCAGGAAAGTGTGGTTGGGGATCTATGGAGCTTCGATTGA 945 0.4603 MCGGAIIADFIPHRGGRRLTASELWPNSFGKKNDSDFDYSHVPHQQPSTLKRSQPSTAVEKPVKRQRKNLYRGIRQRPWGKWAAEIRDPRKGVRVWLGTFNTAEEAARAYDCEARKIRGEKAKVNFPNEDDQYSIQARRRNPPLPVRPPNPPPLYQQQYRCDLNNAPKNLNLEFGYDLNQAGSFASHLGTVNSDSVIVSGDENSEYGSGLGSGPGSGSGSEGADYSATEFMGSNQHASGYFAGMMKTNEKETEQEQKTEVIEAEAAKSEVQELSEELMAYENYMKFYQIPYYDGQSVAHNNVQESVVGDLWSFD. 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06709 314 PANTHER DNA-BINDING DOMAIN 53 276 IPR044808 GO:0003700|GO:0009873
Seca8g06709 314 MobiDBLite consensus disorder prediction 199 226 - -
Seca8g06709 314 SMART rav1_2 70 133 IPR001471 GO:0003700|GO:0006355
Seca8g06709 314 MobiDBLite consensus disorder prediction 123 152 - -
Seca8g06709 314 PRINTS Ethylene responsive element binding protein signature 71 82 IPR001471 GO:0003700|GO:0006355
Seca8g06709 314 PRINTS Ethylene responsive element binding protein signature 93 109 IPR001471 GO:0003700|GO:0006355
Seca8g06709 314 MobiDBLite consensus disorder prediction 35 64 - -
Seca8g06709 314 Gene3D AP2/ERF domain 70 128 IPR036955 GO:0003700|GO:0006355
Seca8g06709 314 MobiDBLite consensus disorder prediction 40 60 - -
Seca8g06709 314 Pfam AP2 domain 71 119 IPR001471 GO:0003700|GO:0006355
Seca8g06709 314 CDD AP2 71 128 IPR001471 GO:0003700|GO:0006355
Seca8g06709 314 FunFam Ethylene-responsive transcription factor 2 69 128 - -
Seca8g06709 314 SUPERFAMILY DNA-binding domain 70 128 IPR016177 GO:0003677
Seca8g06709 314 ProSiteProfiles AP2/ERF domain profile. 70 127 IPR001471 GO:0003700|GO:0006355
Seca8g06709 314 Coils Coil 256 283 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06709 Seca-Chr8 161803409 161805210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06709 1 128 AP2-EREBP Transcription Factor Family AT3G16770 54.676 1.13e-43 148
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Seca8g06709 AP2 6.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06709 K09286 - gmx:100780763 441.039