Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06708 ATGAAGGAGGCCAAGAGGAAGGGACGTCACTCTGGATATGGTAAGCGTAAGGGTACAAGAGAGGCAAGGCTCCCCACCAAAATTCTTTGGATGAGGAGGATGCGTGTGCTCAGACGTTTGCTTCGCAAGTACAGGGAATCAAAGAAGATTGACAAGCACATGTACCATGATATGTACATGAAGGTGAAGGGTAATGTTTTCAAGAACAAGAGAGTCCTGATGGAGAGTATACACAAGTCCAAGGCTGAGAAGGCAAGAGAGAAGACTTTATCTGACCAGTTTGAGGCCAAGCGAGCAAAGAACAAGGCAAGCAGGGAAAGGAAAATTGCTCGGAGAGAAGAGCGCTTGGCTCAAGGTCCTGGTGAGAAGCCATCTGCTGCCCCTAGTGCACCATCTGCCACAGCATCCCAGCCAGCTCAAGCACCAAAGAAATCCAAGAAGTAA 444 0.4865 MKEAKRKGRHSGYGKRKGTREARLPTKILWMRRMRVLRRLLRKYRESKKIDKHMYHDMYMKVKGNVFKNKRVLMESIHKSKAEKAREKTLSDQFEAKRAKNKASRERKIARREERLAQGPGEKPSAAPSAPSATASQPAQAPKKSKK. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06708 147 PANTHER 60S RIBOSOMAL PROTEIN L19 1 123 IPR039547 GO:0003723|GO:0003735|GO:0022625
Seca8g06708 147 SMART Ribosomal_L19e_2 1 81 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca8g06708 147 Pfam Ribosomal protein L19e 2 80 IPR000196 GO:0003735|GO:0005840|GO:0006412
Seca8g06708 147 MobiDBLite consensus disorder prediction 1 20 - -
Seca8g06708 147 MobiDBLite consensus disorder prediction 129 147 - -
Seca8g06708 147 MobiDBLite consensus disorder prediction 79 147 - -
Seca8g06708 147 SUPERFAMILY Ribosomal protein L19 (L19e) 2 79 IPR035970 GO:0003735|GO:0005840|GO:0006412
Seca8g06708 147 MobiDBLite consensus disorder prediction 79 119 - -
Seca8g06708 147 FunFam Ribosomal protein L19 1 127 - -
Seca8g06708 147 Gene3D - 1 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06708 Seca-Chr8 161781690 161783828 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06708 1 147 Cytoplasmic Ribosomal Protein Gene Family AT3G16780 81.633 2.94e-81 236
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06708 K02885 - gmx:100527501 260.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06708 8 161781690 161783828 Seca8g06708 8 161781690 161783828 ECH