Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06702 ATGTCCGCCGATTCTCATGCCCCTAAGGGTCTCCTCTGCAATGCTGGCGCTGGTGCTGCCGCTGGGGTTATTGCTGCTACGTTTGTGTGTCCTTTAGATGTCATCAAAACTAGGTTTCAGGTTCTTGGGGCGCCTCAGCTTGCTAATGGAACTGTTAAAGGCAGTGTTATAGTTGGTAGCTTGGAGCAAATATTTCACAAGGAGGGATTGCGTGGCATGTACCGTGGGCTAGCCCCAACTGTGTTGGCCTTACTTCCAAACTGGGCGGTCTATTTTACCATGTATGAGCAGCTCAAGAGCCTGCTTTGTTCTAATGATGAAAGCCATCACCTTTCAATCGGAGCTAATATGGCAGCTGCTTCGGGAGCTGGAGCTGCAACTACTATTGTTACAAATCCGCTTTGGGTTGTCAAGACTAGACTCCAAACCCAGGGAATGAGACCTGGTATTGTGCCATATAGGAGCACTCTATCTGCTTTGAAGAGAATTGCTCATGAGGAGGGCATTCGGGGGCTGTACAGTGGCCTTGTACCTGCTCTGGCTGGTATCAGTCATGTTGCCATCCAGTTTCCAACATATGAGAAAATAAAATTTTATTTGGCAAATAAAGATAGCTCAGCAATGGATAAGCTAGGTGTACGTGATGTTGCAATTGCATCATCAGTCGCCAAAATTTTTGCTTCTACATTGACATATCCTCATGAGGTTGTTCGTTCTAGACTGCAAGAACAAGGGCATCATTCGGAGAAGCGATACACTGGTGTGACTGACTGCATTAGAAAGGTTTTTCAACAAGAGGGGCTTCCTGGTTTCTACCGTGGATGCGCCACCAACCTCCTAAGGACAACCCCAGCTGCCGCAATCACATTCACTAGCTTCGAAATGATACACCGTTTTCTTGTTTCACATTTTTCTTCAGACCCACAGCCACATATTTTGTAA 942 0.465 MSADSHAPKGLLCNAGAGAAAGVIAATFVCPLDVIKTRFQVLGAPQLANGTVKGSVIVGSLEQIFHKEGLRGMYRGLAPTVLALLPNWAVYFTMYEQLKSLLCSNDESHHLSIGANMAAASGAGAATTIVTNPLWVVKTRLQTQGMRPGIVPYRSTLSALKRIAHEEGIRGLYSGLVPALAGISHVAIQFPTYEKIKFYLANKDSSAMDKLGVRDVAIASSVAKIFASTLTYPHEVVRSRLQEQGHHSEKRYTGVTDCIRKVFQQEGLPGFYRGCATNLLRTTPAAAITFTSFEMIHRFLVSHFSSDPQPHIL. 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06702 313 PRINTS Mitochondrial carrier protein signature 14 27 IPR002067 GO:0055085
Seca8g06702 313 PRINTS Mitochondrial carrier protein signature 126 144 IPR002067 GO:0055085
Seca8g06702 313 PRINTS Mitochondrial carrier protein signature 27 41 IPR002067 GO:0055085
Seca8g06702 313 PRINTS Mitochondrial carrier protein signature 220 242 IPR002067 GO:0055085
Seca8g06702 313 PRINTS Mitochondrial carrier protein signature 76 96 IPR002067 GO:0055085
Seca8g06702 313 SUPERFAMILY Mitochondrial carrier 10 295 IPR023395 -
Seca8g06702 313 FunFam Nicotinamide adenine dinucleotide transporter 1, chloroplastic 1 108 - -
Seca8g06702 313 Gene3D Mitochondrial carrier domain 108 307 IPR023395 -
Seca8g06702 313 PANTHER MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED 12 302 IPR044712 GO:0006862|GO:0055085
Seca8g06702 313 Gene3D Mitochondrial carrier domain 2 107 IPR023395 -
Seca8g06702 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 9 101 IPR018108 -
Seca8g06702 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 211 299 IPR018108 -
Seca8g06702 313 ProSiteProfiles Solute carrier (Solcar) repeat profile. 111 199 IPR018108 -
Seca8g06702 313 Pfam Mitochondrial carrier protein 111 203 IPR018108 -
Seca8g06702 313 Pfam Mitochondrial carrier protein 216 302 IPR018108 -
Seca8g06702 313 Pfam Mitochondrial carrier protein 11 104 IPR018108 -
Seca8g06702 313 FunFam NAD+ transporter 109 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06702 Seca-Chr8 161723203 161728431 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06702 1 307 Chloroplast and Mitochondria Gene Families AT2G47490 78.641 2.39e-170 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06702 K15115 - jre:108994143 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06702 8 161723203 161728431 Seca8g06702 8 161723203 161728431 ECH