Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06698 ATGGGAAAAGCAAGTGCTAAGAAGAAATCCCCCTCCACCGCTGTCCACCCTCCTTACTTCGAGATGATCTCAGATGCGATATCCACGTTGAAAGAGCGCACGGGTTCAAGCCAGCAAGCAATAGCGAAATTCATCGAGGACAAACACAACAAAGTGCTTCCTCCCAACTTCAGGAAACTCCTCTCGGTCCAGTTGAAGAACTTTGTGAAATCTCAGAGGCTTTATAAGGTCAAAAACTCCTACAAGATCTCCCCCACGGACACCAACAAGGCCACTTCGCCAAACAAGCACGAGGATGACAAGAAGGTAATAGAGAAGAGGAAGAAGAAGAAGAAGACCAAGAGCCTGAGTCAGGTGAAGACACCCGAAACACTCAAGACCAAAGCCACAACTACCAACAACAAGAAGAACAAGAAGGATGGGACTAAGAAGAAATCTGTTGTGGTGGTGGCATCTTCAGGGTCAGGGGGGAAAGTGAAGCGTCTGAGTCAGGTGAAGACTCCTGAAGCAATGAAGAAGAAGCCCAACTTGGCCCCTATGAAGCGCAAGACTACTACTCCCAAACCCATCAATTCTTCCAGGCCCACCAGGAATGCTAGGAAATGA 606 0.4818 MGKASAKKKSPSTAVHPPYFEMISDAISTLKERTGSSQQAIAKFIEDKHNKVLPPNFRKLLSVQLKNFVKSQRLYKVKNSYKISPTDTNKATSPNKHEDDKKVIEKRKKKKKTKSLSQVKTPETLKTKATTTNNKKNKKDGTKKKSVVVVASSGSGGKVKRLSQVKTPEAMKKKPNLAPMKRKTTTPKPINSSRPTRNARK. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06698 201 MobiDBLite consensus disorder prediction 79 201 - -
Seca8g06698 201 PRINTS Histone H5 signature 101 115 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g06698 201 PRINTS Histone H5 signature 29 46 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g06698 201 PRINTS Histone H5 signature 2 23 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g06698 201 PRINTS Histone H5 signature 165 184 IPR005819 GO:0000786|GO:0003677|GO:0006334|GO:0030527
Seca8g06698 201 CDD H15 13 92 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g06698 201 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 15 85 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g06698 201 Pfam linker histone H1 and H5 family 16 79 IPR005818 GO:0000786|GO:0003677|GO:0006334
Seca8g06698 201 Gene3D - 8 97 IPR036388 -
Seca8g06698 201 SUPERFAMILY "Winged helix" DNA-binding domain 14 92 IPR036390 -
Seca8g06698 201 MobiDBLite consensus disorder prediction 185 201 - -
Seca8g06698 201 PANTHER HISTONE H1 6 187 - -
Seca8g06698 201 SMART h15plus2 13 80 IPR005818 GO:0000786|GO:0003677|GO:0006334
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06698 Seca-Chr8 161631851 161632553 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06698 17 143 Single Myb Histone (SMH) Gene Family AT1G72740 33.071 9.86e-12 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06698 K11275 - gmx:100306187 178.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06698 8 161631851 161632553 Seca8g06698 8 161631851 161632553 ECH