Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06685 ATGGGAAGAGCTCCTTGTTGTGAGAAAGTGGGGTTGAAGAAGGGGAGGTGGACAGCAGAGGAGGATGAGATCTTAGCCAAATACATTCAGGCCAATGGGGAAGGTTCATGGAGATCATTACCCAAGAATGCAGGGGATTTGGATTTGGAAGGATTATTAAGGTGTGGAAAGAGTTGCAGACTAAGATGGATTAACTATTTAAGAGCTGACCTCAAAAGAGGGAACATTTCTGCTGAAGAGGAAGATACCATTGTAAAGCTACACGCTTCTTTTGGCAACAGGTGGTCATTGATAGCAAGTCACTTGCCAGGAAGAACGGACAACGAAATAAAGAACTACTGGAATTCTCACCTCAGCAGAAAAATTTACCGTTTCCAGAGGGTATCTAATTCAGAGACAGGTGTCATGGATATTCCTCCTCCCCAGCGAAGAGGTGGTAGAACGAGCCGTTGGGCCATGAAGAAGAACAAAGCCTATACGGCCCAAAAGGAAAAACAGATCAGGCCCAAACAAACCGTCGTCAGTACTCAGCAACAGATGAATAGTGAAGCAGCAGCAGTTCCAGTTCCACCCACGCCGTCACTAGAAAGCGAGGGTTTGTCTAACACTGTCTCGGATTTCATGTTGTTGGAGGCCGAGGGAGTAAATAATAAAGTAGATGAGTCAAGAAAAGAGGAGGAGTTAGAGTTAGAGTTAGAGGTGAAAAGAACACATGAGAAGACGTGTGTTGACGGTGAGAAAGAAACCGGTGAAGACGACATCTTAGGACTGTTCTATGAAGTGGAAGGAGGCAGCATTAATGACGACGGTGGGGCGTTGTGTTTTAGTGACATGATGATGATGGAGAGTTGCTTGGTAGAAGAAGCATGTGGGGTTTCGGAATTAAGTGAAGAGAGAGAAGAAGGTAATGACGTGGTGGGTGTTGGTGAGGAAAATGAAAGAACGGAGAGAAAGAATATTGCTAACATTGATTACAATTACAAAATGGCATCATCGAGTAGTGTGAACCTCAGCTCAAATGGGGAAAGTGGAGAATGGTACTGTAGCCCTAATTGGAATTGGGAGAGTGTCATGGAGTTTGATCATGATCTAAACATTATTGATGATCATGATCAGCCAGATGGTTGCGAGTACAAAGAAAATCTGCTTACTTGGTTGTGGGAAGATGATGATTGGGAAAGCGATGGCAAGAAATTGGGAGAGATAGATCCTCAAAGACAAAATGATGTGATTGCTTGGTTTCTCTCTTGA 1251 0.4396 MGRAPCCEKVGLKKGRWTAEEDEILAKYIQANGEGSWRSLPKNAGDLDLEGLLRCGKSCRLRWINYLRADLKRGNISAEEEDTIVKLHASFGNRWSLIASHLPGRTDNEIKNYWNSHLSRKIYRFQRVSNSETGVMDIPPPQRRGGRTSRWAMKKNKAYTAQKEKQIRPKQTVVSTQQQMNSEAAAVPVPPTPSLESEGLSNTVSDFMLLEAEGVNNKVDESRKEEELELELEVKRTHEKTCVDGEKETGEDDILGLFYEVEGGSINDDGGALCFSDMMMMESCLVEEACGVSELSEEREEGNDVVGVGEENERTERKNIANIDYNYKMASSSSVNLSSNGESGEWYCSPNWNWESVMEFDHDLNIIDDHDQPDGCEYKENLLTWLWEDDDWESDGKKLGEIDPQRQNDVIAWFLS. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06685 416 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 212 - -
Seca8g06685 416 ProSiteProfiles Myb-like domain profile. 9 67 IPR001005 -
Seca8g06685 416 Pfam Myb-like DNA-binding domain 14 67 IPR001005 -
Seca8g06685 416 Pfam Myb-like DNA-binding domain 73 118 IPR001005 -
Seca8g06685 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 68 122 IPR017930 -
Seca8g06685 416 FunFam Myb transcription factor 11 73 - -
Seca8g06685 416 CDD SANT 77 118 IPR001005 -
Seca8g06685 416 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 67 IPR017930 -
Seca8g06685 416 SUPERFAMILY Homeodomain-like 11 114 IPR009057 -
Seca8g06685 416 ProSiteProfiles Myb-like domain profile. 68 118 IPR001005 -
Seca8g06685 416 CDD SANT 16 67 IPR001005 -
Seca8g06685 416 FunFam Myb transcription factor 77 122 - -
Seca8g06685 416 Gene3D - 11 73 - -
Seca8g06685 416 Gene3D - 77 122 - -
Seca8g06685 416 SMART sant 72 120 IPR001005 -
Seca8g06685 416 SMART sant 13 69 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06685 Seca-Chr8 161474136 161478188 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06685 1 154 MYB Transcription Factor Family AT2G47460 70.303 2.88e-73 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g06685 Myb_DNA-binding 3.9e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06685 K09422 - gmx:100814275 392.889