Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06679 ATGAAATCTCATCTATTTAAGCCTTTTCAGTTGGCTGGTTCAAATTATAAAATTTTGGAGTTCACTAAATCTAAAGTTTATTTCTTCAGCTTGAAGGATTGGCTGCTTCTTCCTGAAGACAAATATAACAAAAGTGGTTTTGAACTAGAGATGATAACAGAAGAGGCTAAGGATTCTGAGGAAGAGGCTGAAGATTCCAAGGTGGGGCAATCAGGGGGAAGAAGTATAAGCAGAAGTCCCCTTAGTTCGAAATTTGGTATAGCTGTAACTCATGGATTGCCAAATTCAGTAAGTGAAGCATCAAGCATCAAACACGCTTCACCTATTCCAGGAAATAAGAACAGATCTGATCAAGACTTACGTTTGCATAGTGTTGATGATATGAAGATGAGCTGTCAAGCTCCTGATGTTTCACGGCGTTCTACATCATGTCAGCTACCTGATGCATGTGTTAAGACCAGTGAGTCCAAGAATGCTGGTTTTCCAAGCTGTCAGGACCTTGGCCTTACTGGAAATGCAAACTCATCTGGTCAGCAACATGATCTGCATGATCACACTTCCGAGTCTAAGAAGTTGGTAAGTGACATGAGATCAACTTCTGCAAGTGCTGAAGGACTTGCGCATTCAGATGAAAAACTTAGTGCTATGAGTTATTCTAAGAAGAACCAAAAGGGATTTACTCTTCCAAGGGTCTTGGATGATTGCTCAGGTATAGAAAGCAACAACCGTGAAACCTCTTCCACTAAGTTAAAGGCAAGTGAGGGAATCAAATCTACCTGTATTGAAGGTTCTAGGAAAGGGAATGATTTTATTGAAGGGGATGAGCCAATTAGTTTATTGCCTCAAAAGAGAGTAAATGAAGCTGCTTCTACTAAATTAAAAAAATCAAAGAAGATGTCTGCTGATGCAAAGTTGTCTATTGAAAGAACTCCACCAGCAAAAGGTAAATCTCAAGGATTAAAAGTGACATCTGTGGTTGATGAGCCACCCGAGTCTGACGGCTATTTTTCTGTTGGCAAAGATGGTTTAAATAAGTCAAACCTTTGCTTAATTTCTAAATCTGCAGCTTCTACCTCCAACTCACTGGCTTTTGACGAGCCTATCTCAAAAAATGCAAGCTCAGAGTCTGCTCAATGTGATAACGCCTATCAGAATTCGGCACATGTGGCTATTCAAGGCTTAAATGAGTGTAAAGTTAATGGTAGGCCTGATATCACAGGTTTTGGACTGGGACAAGATGATAATGAAGCCGGGCAGCTTAATGTCACTAAAAATCTCGAGTGTAGATCATCATCAGAAAACAAGAAGCCACTGAATGAGGAATCCGCTGGTCGTTTGGATTTAAGCAATGAAGAAAGTAATAAGCTGATTAGGAAATCACCTCGCAAGAAGTCATTTGCCAAGAGAAGTTTGGGTTCTAGACCCAAAACAGGTGTCACTGCTAAACTGAAAAGTTCAGTTTCCTTGAATAAAACTACCCCTCAAAGTGAAGGTGTAAGTTCTTCCAGTGGAAGCAAAGAGATAGCAACTTGTGATGCCAAGAAGCATCAGGCGTCCCCTCAGAACCTTGGTGTTAATAAATTAATGGAGCAAGAAACAGTTAGTAAACATGACGAAGTTGCTGGTGGCAGAACTGAATTTTTGGATGACGAAACAGAGGCTCCTGATGAAAAATGTGAATATGAATTGGGAATGGCTGTTGATGAAGAATTGGTTCATCTATCAAAAAAAGCAAACCCAGCAACAGAAATGAAGTCAGAAGCAAATCACCAAGTAAAAAGAAGTGAAGAAGCAATGCCTCCTAAAAGGGGCACTGATGAAGCTGAAAAACAGAAGCCAGCTTCACGGGAAGACTCAACCTCAAAGTTTAGAGTAAAGCATACAGCGAGAAAGCGCCCTGCAACTACAACCAAGAAGACCACAATTTCGAAGAAGAAATCTGAAGAGGCAGTGTCTGGGGACAAGATTCCTAATGAAACGAGAGATGCGGCAGGGATAGAAATCCAGGAAGAAATGTCTGTACCTGCTGATATAAGTGACAACTCAACTATACCGAGAAATAAGGCAGAGACATTTATTGATGAGGAGAAGGAGAATATACCAATTGATGGAGAGCAGGATATAGTGGAGGACAGAAGTGTTGGAAATCCAACTAATAAATCTAGTGTAAGGCCAGCAAAGATCAACTCCAAGAAAACGGGGCTCAATCCTTCTAATTCAGAATCTAACGCAAGGGTAAAAACTGAAGCCACATGTTTTATATTAAGTGGGCATCGCCTACAGAGAAAGGAGTTTCAACAAGTAATCAAGCGTTTGAAAGGAAGGGTTTGCCGGGACTCTCATCAGTGGTCATATCAGGCGACACACTACATAGCTCCAGACCCTATACGCAGGACAGAGAAATTTTTTGCAGCTACTGCATCAGGAAGGTGGATTCTTAAAACTGATTTCTTAACTGCCAGTAGCCAGGCAGGAAAATTCATGCCAGAGGAGCCTTATGAGTGGCACAAGAATGGTCTCAGTGAGGATGGTGCAATCAATATGGAGGCTCCCAGAAAGTGGCGGCTGTTGAAAGAAAGAACAGGTCATGGTGCCTTCTATGGGATGCGCATTGTTGTATATGGCGATTGTATTGCCCCGCCTTTGGATACTTTGAAGCGTGTGGTCAAAGCTGGAGATGGAACAATATTAGCAACATCTCCTCCTTATACCCGCTTCCTTGGTACCGGGATCGATTATGCCATAGTTAGCCCTGGCATGCCACGTGTTGATTTGTGGGTCCAAGAGTTCTTAAAACATGAGATACCTTGTGTTGTAGCGGACTATTTGGTCGAGTATGTCTGCAAGCCCGGGTTCTCCCTTGACAGACATGTTTTATATGGCACTCATACTTGGGCAGAGAGGTCATTTGCAAAACTTCAAAGTAGAGCAGAAGAGATTATTGAGGAGCTCATTGCTCCTGAGGATGGCAATGATAATGATATAACCTGCCAAGTATGTGGATCCCGGGATAGAGGAGATGTGATGCTGATTTGTGGAGATGAAAGTGGTTCTGTGGGCTGTGGAATCGGTACCCATATCGATTGCTGTGATCCTCCACTCATAGATGTTCCTGCGGAGGATTGGTTTTGCCCAAAATGCTCTAGCACCAAAAACTGCTCAAACAATCCCAGGAAAAAGAAAAAGGGTGCATTGTCTTTATCTAAGGGTAAGTGA 3216 0.421 MKSHLFKPFQLAGSNYKILEFTKSKVYFFSLKDWLLLPEDKYNKSGFELEMITEEAKDSEEEAEDSKVGQSGGRSISRSPLSSKFGIAVTHGLPNSVSEASSIKHASPIPGNKNRSDQDLRLHSVDDMKMSCQAPDVSRRSTSCQLPDACVKTSESKNAGFPSCQDLGLTGNANSSGQQHDLHDHTSESKKLVSDMRSTSASAEGLAHSDEKLSAMSYSKKNQKGFTLPRVLDDCSGIESNNRETSSTKLKASEGIKSTCIEGSRKGNDFIEGDEPISLLPQKRVNEAASTKLKKSKKMSADAKLSIERTPPAKGKSQGLKVTSVVDEPPESDGYFSVGKDGLNKSNLCLISKSAASTSNSLAFDEPISKNASSESAQCDNAYQNSAHVAIQGLNECKVNGRPDITGFGLGQDDNEAGQLNVTKNLECRSSSENKKPLNEESAGRLDLSNEESNKLIRKSPRKKSFAKRSLGSRPKTGVTAKLKSSVSLNKTTPQSEGVSSSSGSKEIATCDAKKHQASPQNLGVNKLMEQETVSKHDEVAGGRTEFLDDETEAPDEKCEYELGMAVDEELVHLSKKANPATEMKSEANHQVKRSEEAMPPKRGTDEAEKQKPASREDSTSKFRVKHTARKRPATTTKKTTISKKKSEEAVSGDKIPNETRDAAGIEIQEEMSVPADISDNSTIPRNKAETFIDEEKENIPIDGEQDIVEDRSVGNPTNKSSVRPAKINSKKTGLNPSNSESNARVKTEATCFILSGHRLQRKEFQQVIKRLKGRVCRDSHQWSYQATHYIAPDPIRRTEKFFAATASGRWILKTDFLTASSQAGKFMPEEPYEWHKNGLSEDGAINMEAPRKWRLLKERTGHGAFYGMRIVVYGDCIAPPLDTLKRVVKAGDGTILATSPPYTRFLGTGIDYAIVSPGMPRVDLWVQEFLKHEIPCVVADYLVEYVCKPGFSLDRHVLYGTHTWAERSFAKLQSRAEEIIEELIAPEDGNDNDITCQVCGSRDRGDVMLICGDESGSVGCGIGTHIDCCDPPLIDVPAEDWFCPKCSSTKNCSNNPRKKKKGALSLSKGK. 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06679 1071 MobiDBLite consensus disorder prediction 429 459 - -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 98 114 - -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 515 529 - -
Seca8g06679 1071 Gene3D BRCT domain 862 961 IPR036420 -
Seca8g06679 1071 ProSiteProfiles Zinc finger PHD-type profile. 994 1050 IPR019787 -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 701 743 - -
Seca8g06679 1071 SMART PHD_3 996 1048 IPR001965 -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 576 660 - -
Seca8g06679 1071 Pfam PHD-finger 997 1049 IPR019787 -
Seca8g06679 1071 SUPERFAMILY BRCT domain 752 839 IPR036420 -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 531 551 - -
Seca8g06679 1071 Gene3D BRCT domain 745 861 IPR036420 -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 98 118 - -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 712 743 - -
Seca8g06679 1071 Pfam BRCA1 C Terminus (BRCT) domain 756 820 IPR001357 -
Seca8g06679 1071 CDD BRCT_TopBP1_rpt7 752 825 - -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 625 639 - -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 641 660 - -
Seca8g06679 1071 SMART BRCT_7 744 825 IPR001357 -
Seca8g06679 1071 SMART BRCT_7 863 950 IPR001357 -
Seca8g06679 1071 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 962 1063 IPR013083 -
Seca8g06679 1071 PANTHER BRCA1 C TERMINUS DOMAIN CONTAINING PROTEIN, EXPRESSED 626 1062 IPR044254 -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 55 79 - -
Seca8g06679 1071 ProSiteProfiles BRCT domain profile. 753 835 IPR001357 -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 479 508 - -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 587 624 - -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 170 208 - -
Seca8g06679 1071 MobiDBLite consensus disorder prediction 424 555 - -
Seca8g06679 1071 SUPERFAMILY FYVE/PHD zinc finger 987 1054 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06679 Seca-Chr8 161419595 161426028 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06679 673 978 Core DNA Replication Machinery Family AT4G02110 58.621 1.03e-122 403
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g06679 BRCT 1.8e-06 CL0459
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06679 K10728 - gmx:100783461 869.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06679 8 161419595 161426028 Seca8g06679 8 161419595 161426028 ECH