Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06673 ATGGGAGAGGTTGTGTTGCTCGTTGATGATTTGAAATCACTTTCTGGGATTTCTCGATGTAGAATATGTCATGAAGAAGAATTCGAAAGCTCCAAAACCTTGGAAGCTCCTTGTGCTTGTTCTGGGACCGTTAAGTTTGCTCATAGAGATTGCATTCAAACATGGTGCAATGAGAAAGGAAATACAACTTGTGAAATATGTTTACAGCAATATGAACCTGGATATACAGCACCTCCAAAAAAATCTCAAATATCTGATGCGGCAATGACCATTAGAGAAAGCCTGCAAATTTCAATGCTGGAGCAAGAACCGTTAAACACAAGAATAGTGGGTATAGTTGAAGGAGTAACAATAGAAAACAATTACTCTGAATGCACGTATGCTGCAGATAGAAGCGCGTCTCTCTGTCGATCACTGGCTTTAGCTGTAAGTATTATCTATATTTACCATTTTTTTTTTCTTTCTTTTTTGTCCTTCTGTAGACTGTAG 489 0.3804 MGEVVLLVDDLKSLSGISRCRICHEEEFESSKTLEAPCACSGTVKFAHRDCIQTWCNEKGNTTCEICLQQYEPGYTAPPKKSQISDAAMTIRESLQISMLEQEPLNTRIVGIVEGVTIENNYSECTYAADRSASLCRSLALAVSIIYIYHFFFLSFLSFCRL. 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06673 162 ProSiteProfiles Zinc finger RING-type profile. 20 67 IPR001841 -
Seca8g06673 162 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 77 IPR013083 -
Seca8g06673 162 CDD RING_CH-C4HC3_MARCH 20 67 - -
Seca8g06673 162 Pfam RING-variant domain 20 67 IPR011016 GO:0008270
Seca8g06673 162 FunFam E3 ubiquitin-protein ligase MARCH4 9 77 - -
Seca8g06673 162 SUPERFAMILY RING/U-box 19 72 - -
Seca8g06673 162 ProSiteProfiles Zinc finger RING-CH-type profile. 12 74 IPR011016 GO:0008270
Seca8g06673 162 SMART ringv_2 19 68 IPR011016 GO:0008270
Seca8g06673 162 Pfam Protein of unknown function (DUF3675) 73 146 IPR022143 -
Seca8g06673 162 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 17 151 IPR033275 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06673 Seca-Chr8 161315693 161318173 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06673 20 67 C3H Transcription Factor Family AT2G37950 44.898 1.29e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06673 - - gmx:100797029 256.914
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06673 8 161315693 161318173 Seca8g06673 8 161315693 161318173 ECH
Seca8g06673 8 161315693 161318173 Seca2g05108 2 137548488 137551425 PCT