Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06668 ATGGCTTCGAATCAACGTCCCTCGAGTTCGGGATCTGAAGGTGGAGATCCTCACATGGACGAGAGGAAGAGGAAGAGGATGCTGTCGAACCGCGAATCGGCGAGGCGTTCGCGGATGAGGAAGCAGAAGCTTCTGGAAGACCTGACCGATGAAGTCAGCAAATTGCAAGGCGCGAACGAGCGTCTAGCTCAGAGCATAAAGGTGAAGGAGGAAGCGTTTATCGAGATGGAAGCTGCTAACGATGTATTGAAGGCTCAAACCATGGAACTCGCAGATCGATTGCGGTTTCTCAACTCCATTCTCGAGATTGCTGAAGAGGTCAGCGGCCTCTCTGTTGATATCCCTCAGATCCCAGACCCTCTCCTGAAACCCTGGCACATTCCTCATCCAATTCACCCTATCCTTTCAGGAGATGCCATGTTCCTGCAGTGA 432 0.5208 MASNQRPSSSGSEGGDPHMDERKRKRMLSNRESARRSRMRKQKLLEDLTDEVSKLQGANERLAQSIKVKEEAFIEMEAANDVLKAQTMELADRLRFLNSILEIAEEVSGLSVDIPQIPDPLLKPWHIPHPIHPILSGDAMFLQ. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06668 143 SMART brlzneu 18 82 IPR004827 GO:0003700|GO:0006355
Seca8g06668 143 MobiDBLite consensus disorder prediction 1 42 - -
Seca8g06668 143 Pfam bZIP transcription factor 22 71 IPR004827 GO:0003700|GO:0006355
Seca8g06668 143 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 25 40 IPR004827 GO:0003700|GO:0006355
Seca8g06668 143 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 20 67 IPR004827 GO:0003700|GO:0006355
Seca8g06668 143 FunFam BZIP transcription factor 20 71 - -
Seca8g06668 143 CDD bZIP_plant_GBF1 23 73 IPR045314 GO:0003700|GO:0006355
Seca8g06668 143 MobiDBLite consensus disorder prediction 15 42 - -
Seca8g06668 143 Coils Coil 31 65 - -
Seca8g06668 143 Gene3D - 20 73 - -
Seca8g06668 143 PANTHER BZIP TRANSCRIPTION FACTOR 44 8 104 - -
Seca8g06668 143 SUPERFAMILY Leucine zipper domain 22 71 IPR046347 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06668 Seca-Chr8 161245990 161246421 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06668 20 141 bZIP Transcription Factor Family AT3G62420 54.918 2.77e-45 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca8g06668 bZIP_1 1.1e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06668 K25786 - gmx:780550 201.445
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06668 8 161245990 161246421 Seca8g06668 8 161245990 161246421 ECH
Seca8g06668 8 161245990 161246421 Seca2g05114 2 137613692 137614132 PCT