Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06644 ATGGCTGTGAAGACTGAGGATGGTGGTGTTGTTGGTTCCTCTTCTTTCCCTGGTAATTATAATTCAAACGGTTATCCATTCTCTAACGTGTTCGATTACTCTGAGGTGGAAAAGAGCTCTCTAGGGTTTATGGAGTTACTGGGTGTTCAGGACTATAGTCCTCTGCTTGATTTACCACAACTATCAACTATGACTTCTGTGGCTGTGACTCATCACCACCCTACTAAGGTTCCATCTGACACTGGGAAAGACTGTTCTGAGGTCTTGAACCAACAACCTGCCACTCCTAACTCTTCTTCCATTTCATCAGCTTCCAGTGAGGCTGTCAATGATGAACAGAATAAGACTGTAGACCAACCAGAAGAACACCAAAAGACCAAGAAACAGGATCTGGTTGTTGTTGGGTTTAGGTTGAAGGCTAAGAAGACAAATCAGAAGAGACAGAGAGAACCAAGATTCGCGTTCATGACTAAAAGCGAGGTCGATCATCTCGAAGATGGATACAGATGGAGAAAGTACGGTCAAAAGGCTGTGAAAAACAGCCCCTTTCCCAGGAGCTACTATCGTTGCACCAGTGCTTCATGTAATGTGAAGAAACGCGTGGAGCGATCTTTCACTGATCCAAGCGTTGTAGTCACAACCTATGAAGGCCAACACACACATCCAAGCCCAGTTATGCCTCGTTCAGGCCTCGCCGGAGCTCCGATACGGCCAGGTGTCTCCGCCACCAACTTTGCTTCAGTTCTGTCAGGAAACTACTTATCTCAGTATCAGAACCACCACCACCAACAACAACTACTTGTCAATACGTTGTCGTCTTTGGGTTTCCCTAATTATAATGATTCTTCATCTTCAAAAAACGGTGCTTTTACTCAAGAGAGACAGCTTTGTAATCCAGGGACTACTGCATTTCTAAGGGATCATGGGCTTCTTCAAGATGTTGTTCCTTCACACATGTTGAAAGAAGAGTAG 972 0.4486 MAVKTEDGGVVGSSSFPGNYNSNGYPFSNVFDYSEVEKSSLGFMELLGVQDYSPLLDLPQLSTMTSVAVTHHHPTKVPSDTGKDCSEVLNQQPATPNSSSISSASSEAVNDEQNKTVDQPEEHQKTKKQDLVVVGFRLKAKKTNQKRQREPRFAFMTKSEVDHLEDGYRWRKYGQKAVKNSPFPRSYYRCTSASCNVKKRVERSFTDPSVVVTTYEGQHTHPSPVMPRSGLAGAPIRPGVSATNFASVLSGNYLSQYQNHHHQQQLLVNTLSSLGFPNYNDSSSSKNGAFTQERQLCNPGTTAFLRDHGLLQDVVPSHMLKEE. 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06644 323 MobiDBLite consensus disorder prediction 84 113 - -
Seca8g06644 323 SMART WRKY_cls 164 223 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06644 323 SUPERFAMILY WRKY DNA-binding domain 156 224 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g06644 323 MobiDBLite consensus disorder prediction 114 130 - -
Seca8g06644 323 PIRSF WRKY_txn_fact_IIc 1 323 IPR017396 GO:0003700
Seca8g06644 323 Gene3D WRKY domain 149 225 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g06644 323 MobiDBLite consensus disorder prediction 72 130 - -
Seca8g06644 323 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 69 263 IPR044810 GO:0003700
Seca8g06644 323 Pfam WRKY DNA -binding domain 165 222 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06644 323 ProSiteProfiles WRKY domain profile. 159 224 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06644 323 FunFam WRKY transcription factor 57 150 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06644 Seca-Chr8 161045384 161047217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06644 25 323 WRKY Transcription Factor Family AT2G47260 47.353 7.07e-68 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g06644 WRKY 1.3e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06644 - - aprc:113872234 476.092
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06644 8 161045384 161047217 Seca8g06644 8 161045384 161047217 ECH