Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06626 ATGGTTCCGAAATCCCATTTCCTTGTCATTCTATTTCTGCTTTCAACGTTATGCATCACTTGCAGTTCCAGCTCAGATAAGCAGGCTGATTTTGATAAGTGGATATCTTGGAATGTGAAGAATTACAAGGAAAAGACCATTTTGAAAACCAAATGGAACGTGGATTTGAAGCTGAGGCAGGCTGAAAGTAACAAAGTTAGAATAAGAGTTAGCCAAGACGGTTCTGGTGACTTCAAGACCATTACAGAAGCTCTTAATAGCATTCCACCTCGCAACACTAGGAGAGTCATACTGTTGATTGCACCAGGTATTTATAGGGAGAAAGTTATGGTGCCGAGAACATTGCCTTTCATTACATTCTTAGGGAACGCGACGGATCCACCAACCATTACTGGAAATGATACAGCGTCTGTCACTGGAAGAGATGGGACTCCCATAGGGACGTTCCAGAGTGCAACTGTTGCTGTGGATGCTACCTATTTTATGGCCATCAACATAAAATTCGAGAACACTGCTCCGCATGCGATTGGAAAGGTGGGGGAACAAGCCGTGGCGCTTCGCATCTCAGGAACCAAAGCTGCTTTTTACAATTGCACTTTCTATGGGGCTCAAGACACACTCTATGATCACAAAGGCCTTCACTACTTCAATAATTGCTTTATTCAAGGCTCTGTTGATTTCATCTTCGGCTCCGGAAGGTCCCTTTACGAGACTCTATATCACTACTAA 729 0.4348 MVPKSHFLVILFLLSTLCITCSSSSDKQADFDKWISWNVKNYKEKTILKTKWNVDLKLRQAESNKVRIRVSQDGSGDFKTITEALNSIPPRNTRRVILLIAPGIYREKVMVPRTLPFITFLGNATDPPTITGNDTASVTGRDGTPIGTFQSATVAVDATYFMAINIKFENTAPHAIGKVGEQAVALRISGTKAAFYNCTFYGAQDTLYDHKGLHYFNNCFIQGSVDFIFGSGRSLYETLYHY. 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06626 242 ProSitePatterns Pectinesterase signature 2. 221 230 IPR033131 -
Seca8g06626 242 Pfam Pectinesterase 68 235 IPR000070 GO:0030599|GO:0042545
Seca8g06626 242 SUPERFAMILY Pectin lyase-like 67 237 IPR011050 -
Seca8g06626 242 Gene3D - 21 240 IPR012334 -
Seca8g06626 242 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 55 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06626 Seca-Chr8 160864904 160868245 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06626 7 237 Carbohydrate Esterase AT5G47500 43.966 3.19e-55 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06626 K01051 - cit:102614801 337.421