Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06625 ATGGAGATTATGCAGTACTCGAAGAGTAGTGTTCATGTGATGAGAAGTTTATCAGATTGTGGAGTAACACATGGAAATGGAAGTGAAGAAGGGATGGTAATAAGGAAAGGTCCATGGACAGAGGAAGAGGATTCTGTTCTGATCAACTACGTCCACGTCCATGGCGAAGGTCACTGGAACTCCGTTGCTCGCTGTTCAGGGCTAAAGCGAACAGGAAAAAGCTGCAGATTAAGATGGTTGAACTACTTGCGTCCAAATGTTCGACGTGGGAACATTACCCTCCAAGAACAGCTCCTGATTCTTGACCTTCATTCCCGCTGGGGCAATCGGTGGTCTAAAATAGCAGAACAATTGCCTGGGAGAACAGACAATGAGATCAAGAACTATTGGAGGACCAGAGTGGTGAAACTGGCAAGGCAACTCAAATGTGATGTTAACAGCAAACAGTTTAGAGACACCTTGCGTTTTGTTTGGATGCCACGCCTCATGGAGAGGATTCAGGCCTCTAGTCCTTCTTCCCATAGCCATGACCAAACTAGTGTCTGTAGAACTACTCAAGCCCATAGTGAATCCTGTGGGGCCAATCCCCTCATGGTGTCAGAGGTTTCGTCGTTCTCTTCAGGGGTTGATGTTCAAGTTCAACCTCCTTCTCTCTCTGAATCAAGCTTATCTACTTACAATTTAATGGGCGGTAGTAACTGGTCACCAGATAGTGCTGAAATTGGATATTCCACACCTACACCATTGCAATGGAACTGCTCAGACATGCAAGCATTTGAACTAGGCAATGGTTTTGGCAGTGCTGACTTGTGGACTGATGAAAACATATGGTTCTTGCAGCAGCAGCTTGCTGATGATTTATGA 864 0.456 MEIMQYSKSSVHVMRSLSDCGVTHGNGSEEGMVIRKGPWTEEEDSVLINYVHVHGEGHWNSVARCSGLKRTGKSCRLRWLNYLRPNVRRGNITLQEQLLILDLHSRWGNRWSKIAEQLPGRTDNEIKNYWRTRVVKLARQLKCDVNSKQFRDTLRFVWMPRLMERIQASSPSSHSHDQTSVCRTTQAHSESCGANPLMVSEVSSFSSGVDVQVQPPSLSESSLSTYNLMGGSNWSPDSAEIGYSTPTPLQWNCSDMQAFELGNGFGSADLWTDENIWFLQQQLADDL. 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06625 287 SUPERFAMILY Homeodomain-like 34 130 IPR009057 -
Seca8g06625 287 ProSiteProfiles Myb-like domain profile. 35 83 IPR001005 -
Seca8g06625 287 Gene3D - 93 134 - -
Seca8g06625 287 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Seca8g06625 287 Gene3D - 36 88 - -
Seca8g06625 287 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 34 202 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca8g06625 287 FunFam MYB transcription factor 93 156 - -
Seca8g06625 287 CDD SANT 93 132 IPR001005 -
Seca8g06625 287 CDD SANT 38 83 IPR001005 -
Seca8g06625 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 87 IPR017930 -
Seca8g06625 287 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 138 IPR017930 -
Seca8g06625 287 FunFam Myb transcription factor 36 88 - -
Seca8g06625 287 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Seca8g06625 287 Pfam Myb-like DNA-binding domain 89 132 IPR001005 -
Seca8g06625 287 SMART sant 88 136 IPR001005 -
Seca8g06625 287 SMART sant 35 85 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06625 Seca-Chr8 160856389 160857433 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06625 29 286 MYB Transcription Factor Family AT2G47190 49.630 5.81e-82 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g06625 Myb_DNA-binding 2.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06625 K09422 - gmx:778040 369.007