Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06623 ATGCAGAACAATGATAACGAGATAGGCATCAGAAAAGGCCCATGGACGTTAGACGAGGACACCATTCTCGTCAATTACATTACCACCCATGGTGAAGGTCACTGGAATTCCGTGGCACGTTGTGCAGGCATGTTATCTCCTCCTAGCTACATGTTTCAATTTTTCAATTATAATAAATCTAAAATTAAATATACAGGTCTGAGGAGAAGTGGGAAGAGTTGCAGATTAAGGTGGCTAAACTACTTGCGTGCTGATGTTCGGCGTGGAAATATCACACTTGAAGAACAGATATTGATTCTTGAGCTCCATTCTCGGTGGGGAAATAGGTGGTCCAAGATTGCTCAGCACCTTCCTGGTAGAACAGACAATGAAATTAAAAACTATTGGAGGACCAGAGTTATAAAACAAGCGAAGCAACTAAAGTGTGATGTGAACAGCAAACAATTCAGAGACGCCTTGCGTTACGTGTGGATGCCTCGCTTGCTCGAGAGGGTTCAGCCAGCATCTCAATCTCAGAATCAACTGCTGGACCCAAACTTAAGTGCTGCAGGTGGGGTCCTAAACGGTTCATCAGATTCAGGAACAGAGTGGGCAAAACAGAACCACTCCTCGTCCTGTGTCAGCGGTACTTGCTCAGACTCATCATCATCCGTGGAGTTCCAAGTTCCTTCAAATTCGGACCATATTGATTCTTCGGAACAGTTGGGTCCTAAAGGCTCGGATCTCTGGCCAAGCCAGATGTTAGAACAGGGGAACGGTGGTGACTCGTCAGAGAGTTTGTGGAATGATGACAGTGTATGGTTTTTGCAATTGCAACAGCTTTCTGATGACCTCGAAATAAAAAACAATTTCCTTGCGTGA 861 0.4483 MQNNDNEIGIRKGPWTLDEDTILVNYITTHGEGHWNSVARCAGMLSPPSYMFQFFNYNKSKIKYTGLRRSGKSCRLRWLNYLRADVRRGNITLEEQILILELHSRWGNRWSKIAQHLPGRTDNEIKNYWRTRVIKQAKQLKCDVNSKQFRDALRYVWMPRLLERVQPASQSQNQLLDPNLSAAGGVLNGSSDSGTEWAKQNHSSSCVSGTCSDSSSSVEFQVPSNSDHIDSSEQLGPKGSDLWPSQMLEQGNGGDSSESLWNDDSVWFLQLQQLSDDLEIKNNFLA. 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06623 286 Gene3D - 12 87 - -
Seca8g06623 286 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 228 IPR044676 GO:0003700|GO:0006355|GO:0043565
Seca8g06623 286 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Seca8g06623 286 Pfam Myb-like DNA-binding domain 12 82 IPR001005 -
Seca8g06623 286 CDD SANT 92 131 IPR001005 -
Seca8g06623 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 7 82 IPR017930 -
Seca8g06623 286 MobiDBLite consensus disorder prediction 217 233 - -
Seca8g06623 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Seca8g06623 286 MobiDBLite consensus disorder prediction 245 259 - -
Seca8g06623 286 FunFam MYB transcription factor 92 155 - -
Seca8g06623 286 SUPERFAMILY Homeodomain-like 9 129 IPR009057 -
Seca8g06623 286 Gene3D - 92 133 - -
Seca8g06623 286 SMART sant 11 84 IPR001005 -
Seca8g06623 286 SMART sant 87 135 IPR001005 -
Seca8g06623 286 MobiDBLite consensus disorder prediction 217 259 - -
Seca8g06623 286 CDD SANT 14 82 IPR001005 -
Seca8g06623 286 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Seca8g06623 286 ProSiteProfiles Myb-like domain profile. 7 82 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06623 Seca-Chr8 160822997 160824338 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06623 10 276 MYB Transcription Factor Family AT2G47190 44.643 2.76e-71 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g06623 Myb_DNA-binding 3.3e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06623 K09422 - gmx:778065 305.834