Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06615 ATGGCATCAGCGGGTGTAGCACCTGCTTCTGGGTTAAGAGATGTAAAAGCAAGTTCAGTTGCTGCTGTTGATAGGTTGCCTGATGAGATGAATGACATGAAAATTAAGGATGACAAGGAAATGGAACCAACTGTGGTAGATGGAAATGGGACTGAAACAGGACATGTAATTGTCACTACCATTGGTGGTAAAAATGGCCAACCAAAGCAGACAATAAGTTACATGGCTGAGCGTGTTGTTGGCCATGGATCGTTTGGTGTAGTTTTCCAGGCAAAGTGCTTGGAGACAGGTGAAACTGTGGCTATAAAGAAGGTTCTTCAAGACAAGAGGTACAAGAACCGGGAATTGCAAACCATGCGCCTTCTGGACCACCCCAATGTTGTCAGTTTGAAGCACTGTTTCTTTTCAACAACTGAAAAGGATGAACTTTATCTTAACTTGGTACTTGAATATGTTCCCGAGACTGTCCATCGGGTTATCAGACACTACAAGAAAATGAATCAAAGGATGCCATTGATATATGTAAAACTTTATTCTTACCAGATATTGAGAGCACTAGCTTATATTCACAACTGTATTGGAGTGACTCACAGGGACATAAAACCCCAAAATTTATTGGTCAATCCTCACACTCATCAGCTGAAGCTTTGTGACTTTGGGAGTGCAAAAGTCCTGGTTTTAGGTACCCCAACAAGGGAAGAAATAAAGTGTATGAATCCTAATTACACAGAGTTCAAATTCCCACAAATCAAAGCCCATCCATGGCACAAGATCTTTAACAAGCGTATGCCATCTGAAGCTGTGGATCTTGTCTCAAGACTACTGCAATACTCTCCAAATCTTCGATGCACAGCTGTGAGTATATAA 867 0.4141 MASAGVAPASGLRDVKASSVAAVDRLPDEMNDMKIKDDKEMEPTVVDGNGTETGHVIVTTIGGKNGQPKQTISYMAERVVGHGSFGVVFQAKCLETGETVAIKKVLQDKRYKNRELQTMRLLDHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIRHYKKMNQRMPLIYVKLYSYQILRALAYIHNCIGVTHRDIKPQNLLVNPHTHQLKLCDFGSAKVLVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFNKRMPSEAVDLVSRLLQYSPNLRCTAVSI. 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06615 288 Gene3D Transferase(Phosphotransferase) domain 1 154 225 - -
Seca8g06615 288 Gene3D Transferase(Phosphotransferase) domain 1 226 288 - -
Seca8g06615 288 SMART serkin_6 74 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06615 288 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Seca8g06615 288 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Seca8g06615 288 SUPERFAMILY Protein kinase-like (PK-like) 73 287 IPR011009 -
Seca8g06615 288 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 38 226 - -
Seca8g06615 288 Pfam Protein kinase domain 74 231 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06615 288 ProSiteProfiles Protein kinase domain profile. 74 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06615 288 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
Seca8g06615 288 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Seca8g06615 288 CDD STKc_GSK3 69 286 IPR039192 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06615 Seca-Chr8 160721612 160725646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06615 74 231 MAP Kinase Gene Family AT5G19010 39.024 3.60e-27 108
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca8g06615 Pkinase 4.8e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06615 K00924 - gmx:100788046 427.172