Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06614 ATGGTGGCTGAAGCAGAGCTTGTGTGTCAACAGAACGTGGGTGTGTTAGATGTGAAGTATTTTCCAAATAAAGGGAGCAATTTTAACGAGATCGGAGATACAGATGCCATATCGCCTCCGAGTTTTGACCGAGTTCGTGCTTCCGAATCAGTCTCCGCTGAGTTACTCACTTCACAAGAAGATGTTAAGACTGCAGACATAATCTCAGATGCTGCTCTTGAATCTGCGGTTATGCAATTTGTCCCCTGCATCCGTTCTGGTAGTTTTGCTGACATTGGTCCACGGAGATACATGGAAGATGAACACATAAGGATAGATGATTTGTCTTCTCATCTGGGATCACTATACAACTTTCCTAAACCAAGTGCCTTTTATGGGGTGTTTGATGGTCATGGAGGACCAGAAGCTGCAGCTTATATAAGAAAAAATGTGATAAAATTCTTCTTTGAGGATGTCAGTTTCCCTCAGACATCTGAAGTTGATAACGTATTTTTACAAGAGGTAGAGAATTCCCTCAGAAAGGCATTTCTTTTGGCTGACTCAGCTTTGGCTGATGATTGCAGTGTGAATACTTCATCAGGGACCACGGCCCTTACTGCTTTGATATTTGGAAGGCTCCTAATGGTGGCCAATGCTGGTGACTGTCGAGCCGTTCTCAGTCGCAAAGGAGAGGCCATTGACATGTCTCAAGATCACAGGCCTATTTATGCATCAGAGCGGAGGAGAGTTGAAGAATTGGGTGGCTACATAGATGATGGTTATCTCAATGGGGTTTTATCAGTTACTAGAGCACTTGGAGACTGGGACATGAAGTTACCAAAAGGTGCTCCTTCACCTTTGATTGCAGAACCTGAGTTCCGGCAAGTGGTTCTAACAGAGGATGATGAATTCCTCATCATAGGATGTGATGGTATCTGGGATGTGATGTCAAGTCAGCATGCTGTTAGCCTTGTTAGGAAAGGCCTGAGGAGGCATGATGACCCAGAGAAATGCGCCAGGGACCTGGTTATGGAGGCATTACGCCTTAACACATTTGACAATCTCACAGTGATCATTGTATGCTTTTCTTCCCTTGACCACAGGGAGCCAGAGCCATCCCCACCTCGCCAACGGAAATTGAGATGTTGTAGCCTCTCTGCAGAGGCTCTTTGCAGCTTGAGGAGCTTGTTGGAAGGCAGTGCTAGTAACTGA 1191 0.4551 MVAEAELVCQQNVGVLDVKYFPNKGSNFNEIGDTDAISPPSFDRVRASESVSAELLTSQEDVKTADIISDAALESAVMQFVPCIRSGSFADIGPRRYMEDEHIRIDDLSSHLGSLYNFPKPSAFYGVFDGHGGPEAAAYIRKNVIKFFFEDVSFPQTSEVDNVFLQEVENSLRKAFLLADSALADDCSVNTSSGTTALTALIFGRLLMVANAGDCRAVLSRKGEAIDMSQDHRPIYASERRRVEELGGYIDDGYLNGVLSVTRALGDWDMKLPKGAPSPLIAEPEFRQVVLTEDDEFLIIGCDGIWDVMSSQHAVSLVRKGLRRHDDPEKCARDLVMEALRLNTFDNLTVIIVCFSSLDHREPEPSPPRQRKLRCCSLSAEALCSLRSLLEGSASN. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06614 396 ProSitePatterns PPM-type phosphatase domain signature. 124 132 IPR000222 GO:0043169
Seca8g06614 396 SMART PP2C_4 75 353 IPR001932 -
Seca8g06614 396 Pfam Protein phosphatase 2C 95 347 IPR001932 -
Seca8g06614 396 ProSiteProfiles PPM-type phosphatase domain profile. 85 355 IPR001932 -
Seca8g06614 396 CDD PP2Cc 84 355 IPR001932 -
Seca8g06614 396 FunFam Probable protein phosphatase 2C 22 69 358 - -
Seca8g06614 396 Gene3D - 74 362 IPR036457 -
Seca8g06614 396 PANTHER PROTEIN PHOSPHATASE 2C 70 353 IPR015655 GO:0004722|GO:0006470
Seca8g06614 396 SUPERFAMILY PP2C-like 78 357 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06614 Seca-Chr8 160701156 160704091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06614 98 392 PP2C-type Phosphatase Gene Family AT3G62260 71.284 6.20e-156 439
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06614 K14803 - gmx:100819791 739.184
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06614 8 160701156 160704091 Seca8g06614 8 160701156 160704091 ECH