Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06605 ATGGAAGCTAGATTTGGTGCAGAAGCTTATCATTTTTATGGTGTGGGTGCTTCCTCGGATTTGAGGGTTGTAGGGAAAAGGTCCTCAGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATAGCTAGTCGGGTGAATCCAGTGCCAGCAGATGGTTTGGGAATGGGACAGCAAATTTTCCCTCTTGAGCCTGGGATCCCGGCCTCCAACAGCTCTTCTTCCTGCTCTGAGGAAGTAGATCCTTGGAATCCCAAGGGGAACAAGGAAGGGGAGAAAAAAAGGAGAGTTATTGTGCTGGAGGATGATGATTTGAATGAGGAAGCAGGTACCCTTAGTTTAAAGCTTGGTGGGCATGCTTCTCCAATGGTGGATAGGGAGATTGCGGGCTGGGATGGTATGAACGGTAAAAAAAGCAGAGTAGCTGGAGGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGAGCAGGGCTAAGGATTATCACAGGCGTCATAAAGTTTGTGAGATGCACTCCAAAGCTAGTAGGGCGCTTGTGGGCAATGCAATGCAGAGGTTCTGCCAACAATGTAGTAGGTTTCACTTGCTTCAAGAATTTGATGAAGGAAAGAGAAGCTGTAGAAGACGCTTGGCAGGCCACAATAAACGAAGAAGGAAAACAAATACCGAAGCTGTTCCTAATGGAAGTTTGCTAAATGATGATCAAACTAGTAGTTATCTGCTGATAAGTTTATTGAAGATACTTTCGAATATGCATTCTGACAGATCAGATCAGACTACAGATCAGGATCTACTAACTCATCTTCTAAGGAGTCTTGCTAATCAGAATAGTGAACAAGGGGCCAAGAACTTGTCTGACCTTTTGCGGGAACCAGAGAATTTGTTGAGAGCAAGTGGTTCATCTAGGAAGTCAGAGATGGTGTCAACTTTATTCTCCAATGGTTCTCAAGGCTCTCCACCTGTTATAAGACCACATCAAACTGTATCTATGACTAAAATGCAACAGCAAGTGATGCTTGCACATGATGCTAGTGCTGCTGATCCACACCTCATGTCTTCTATAAAGCCCAGCATTTCAAACAGTCCTCCATCTTACTCAGATGCCAGAGACAGTGCTGCTAGACAAATCAAGATGAACAACTTTGACTTGAATGATGTATATATTGACTCAGATGATGGCATGGAAGATCTAGAAAGATTGCCTGTCTCTTCAAATCTTGTCACTAGCTCTCTTGATTACCCATGGACACAACAAGATTCTCATCAGTCTAGTCCACCTCAGACAAGTGGAAATTCAGATTCTGGATCTGCCCACTCCCCGTCTAGTTCCAGTGGAGAAGCTCAGGTAGTGTGTGGTCTTGGTGCTGATGTCTTGACATGCTGTTCCAAACTCTCAACTTTTTATGCTGCTTCATACTATGATATCCATCTTGGTACTATAGACTTGTATAGTAATAGTCGCACAGATCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCGAATGATTTTCCTCTTATACTTAGAGCACAGATTCTTGATTGGTTATCTCACAGTCCTACTGATATTGAAAGCTACATTAGACCTGGTTGTATTGTTTTGACCATTTATCTGCGTCAGGCTGAAGCTGTTTGGGAGGAACTTTGCTATGATCTGACGTCCAGTTTGAGTAGGCTGCTGGATGTCTCAGATGATACTTTTTGGAAAACTGGATGGGTTCACATTAGGGTGCAGCATCAGATGGCATTCATTTTCAATGGTCTCTTGCCATGTCAAGTTGTCATAGATACATCGCTACCTTTCAGAAGTAACAATTATAGCAAGATTTTAACTGTTAGTCCAATTGCTGTACCAACATCAAAGAGAGTTCAATTTAAAGTTAAGGGGGTCAACATGATACGCCCTGCTGCTAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGCCTGTGAAGATGCTCATGAGTCAATGGATCAATACCCCAAGGAGTTTGATGGACTTCAGTGCGTCCAGTTTGCATGTTCTGTCCCAGGGACGAATGGAAGAGGATTTATCGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATAGTTGCGGAGGAAGATGTTTGCTCAGAAATCTGTGTACTTGAGCCTCTACTGGAATTAAGTGAAACAGATCCAGATATTGAAGGGACTGGAAAAATGAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAAAAGCCAATTGAGGTCTAGGATGGTTCACTTGAACTCAAGTGCAGATCTCTTTCCATTAACACGGTTCAAGTGGCTTATGGAGTTTTCTATGGACCGTGATTGGTGTGCAGTAGTGAAAAAACTGTTGAATCTACTGCTTGATGGAACTGTGAATACAGGGGACCACCCTTCCCTGGATCTTGCACTTTCAGAGATGAGCCTCCTTCACAGAGCTGTAAGGAGAAATAGCAAGCAGTTAGTGGAGCTGCTTTTGACATATGTTCCTGATAATATTTCTGATAAAGACAGGGCTGAAAAGGCACTAGTTAATGGAGAGAATCAGAGCTTCTTGTTTAGACCTGATGCTGTTGGTCCTGCTGGTTTGACGCCACTCCATATAGCCGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTAACTAATGATCCTTGCAAGGTCGGAATTGAGGCATGGAAGAGTGCTCGTGACAGCACAGGCTCCACACCTGAGGATTATGCACGTTTACGTGGGCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAGAGACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCAAGCAATCTGACAGAGAGCAATACAAACCAGAAGCAAAATGAACCGTCCACAAGCTTTGAGATTGGAAAGGCTGAAGTACCACGTGGCCAAGGGCACTGTAAACTTTGTGATAGCAAATTTTCTTGTAGAACTGCATTAGGCAGGTCTTTGGTATACAGACCTGCGATGCTCTCTATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCCCTTCTGTTTAAAAGCTCACCCGAAGTTCTATACATGTTTAAACCCTTCAGATGGGAATCGTTGGATTTCGGAACAAGTTAA 3153 0.4332 MEARFGAEAYHFYGVGASSDLRVVGKRSSEWDLNDWRWDGDLFIASRVNPVPADGLGMGQQIFPLEPGIPASNSSSSCSEEVDPWNPKGNKEGEKKRRVIVLEDDDLNEEAGTLSLKLGGHASPMVDREIAGWDGMNGKKSRVAGGTSNRAVCQVEDCGADLSRAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNTEAVPNGSLLNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRSLANQNSEQGAKNLSDLLREPENLLRASGSSRKSEMVSTLFSNGSQGSPPVIRPHQTVSMTKMQQQVMLAHDASAADPHLMSSIKPSISNSPPSYSDARDSAARQIKMNNFDLNDVYIDSDDGMEDLERLPVSSNLVTSSLDYPWTQQDSHQSSPPQTSGNSDSGSAHSPSSSSGEAQVVCGLGADVLTCCSKLSTFYAASYYDIHLGTIDLYSNSRTDRIVFKLFGKEPNDFPLILRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWEELCYDLTSSLSRLLDVSDDTFWKTGWVHIRVQHQMAFIFNGLLPCQVVIDTSLPFRSNNYSKILTVSPIAVPTSKRVQFKVKGVNMIRPAARLMCALEGKYLACEDAHESMDQYPKEFDGLQCVQFACSVPGTNGRGFIEIEDQGLSSSFFPFIVAEEDVCSEICVLEPLLELSETDPDIEGTGKMKAKSQAMDFIHEMGWLLHKSQLRSRMVHLNSSADLFPLTRFKWLMEFSMDRDWCAVVKKLLNLLLDGTVNTGDHPSLDLALSEMSLLHRAVRRNSKQLVELLLTYVPDNISDKDRAEKALVNGENQSFLFRPDAVGPAGLTPLHIAAGKDGSEDVLDALTNDPCKVGIEAWKSARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAAHVVVEIPSNLTESNTNQKQNEPSTSFEIGKAEVPRGQGHCKLCDSKFSCRTALGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFKPFRWESLDFGTS. 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06605 1050 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Seca8g06605 1050 SUPERFAMILY Ankyrin repeat 820 936 IPR036770 -
Seca8g06605 1050 MobiDBLite consensus disorder prediction 422 450 - -
Seca8g06605 1050 MobiDBLite consensus disorder prediction 70 92 - -
Seca8g06605 1050 MobiDBLite consensus disorder prediction 304 328 - -
Seca8g06605 1050 Gene3D - 787 975 IPR036770 -
Seca8g06605 1050 MobiDBLite consensus disorder prediction 358 378 - -
Seca8g06605 1050 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Seca8g06605 1050 Pfam SBP domain 153 226 IPR004333 GO:0003677
Seca8g06605 1050 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Seca8g06605 1050 SMART ANK_2a 876 906 IPR002110 GO:0005515
Seca8g06605 1050 SMART ANK_2a 820 850 IPR002110 GO:0005515
Seca8g06605 1050 MobiDBLite consensus disorder prediction 303 328 - -
Seca8g06605 1050 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
Seca8g06605 1050 MobiDBLite consensus disorder prediction 360 375 - -
Seca8g06605 1050 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 91 937 IPR044817 GO:0003677
Seca8g06605 1050 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06605 Seca-Chr8 160664329 160672356 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06605 1 1050 SBP-box Gene Family AT3G60030 51.640 0.0 942
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca8g06605 SBP 6.1e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06605 - - gmx:100809806 1687.93