Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06604 ATGGAAGCTAGATTTGGTGGAGAAGCTTATCATTTTTATGGTGTGGGTGCTTCCTCGGATTTGAGGGTTGTGGGGAAGAGGTCCCCAGAATGGGATTTGAATGATTGGAGATGGGATGGTGATCTGTTCATAGCTAGTCGGGTGAATCCAGTGCCAGCAGATGGTGTGGGAGTGGGACAGCGTTTTTTCCCTCTTGAGTCTGGGATTCCGGCCTCCAACAGCTCTTCTTCCTGCTCTGAGGAAGCAGATCTTAGGAATCCAAAAGGGAACAGGGAAGGGGAGAAGAAAAGGAGAGTTATTGTGCTGGAGGATGATGATTTGAATGAGGAAGCAGGTACCCTTAGTTTAAAGCTTGGTGGGCATGCTTCTCCAATGGTGGATAGGGAGATTGCGGGATGGGATGGTATGAATGGTAAAAAAAGCAGAGTAGCTGGAGGTACTTCAAATCGAGCTGTTTGTCAGGTGGAGGACTGTGGTGCAGATCTGACCAGGGCTAAGGATTATCACAGGCGTCATAAAGTTTGTGAGATGCACTCCAAGGCCAGCAGGGCGCTTGTGGGCAATGCAATGCAGAGGTTCTGTCAACAATGTAGTAGGTTTCACTTGCTTCAAGAATTTGATGAAGGTAAGAGAAGCTGTAGAAGACGCTTGGCAGGCCACAATAAACGAAGAAGGAAAACAAATAATGAAGCTGTTCCTAATGGAAGCTCGCCAAATGATGATCAAACCAGTAGTTATCTTCTGATAAGTTTATTGAAGATACTTTCGAATATGCATTCTGACAGATCAGATCAGACTACAGATCAGGATCTACTAACTCATCTTCTAAGGAGTCTTGCTAATCAGAATAGTGAACAAGGGGCCAAGAATTTGTCTAACCTTTTGCAGGAACCGGAGAATTTGTTGAGAGAAGGTGGTTCATCTAGGAAGTCAGAGATGGTGTCAACTTTATTCTCCAATGGTTCTCAAGGCTCTCCACCTGTTATAAGACCACATCAAACTGTATCTATGACTAAAATGCAACAGCAAGTGATGCATGCACATGATGCTAGGGCTTCTGATCCGCAACTCACGTCTTCTACAAAGCCCAGCATTTCAAACAGTCCTCCATCTTACTCAGAAGCCAGAGACAGTACTGCTAGACAAATCAAGATGAATAACTTTGATTTGAATGATGTATATATTGACTCAGAGTCAGATGATGGCATGGAAGATCTAGAAAGATTGCCTGTCTCTACAAATCTTGTCACTAGCTCTCTTGATTACCCATGGACCCAACACGATTCTCATCAGTCAAGTCCGCCTCAGACAAGTGGAAATTCAGACTCTGCATCTGCGCACTCCCCGTCTAGTTCCAGTGGAGAAGCTCAGAGTCGCACAGACCGAATTGTTTTTAAACTCTTTGGTAAAGAGCCGAATGATTTTCCTCTTATACTTAGAGCACAGATTCTTGACTGGTTATCCCACAGTCCTACTGATATTGAAAGCTACATACGACCTGGTTGTATTGTTTTGACCATTTATCTACGTCAGGCTGAAGCTGTATGGGAGGAACTTTGCTATGATCTGACTACCAGTTTGAGTAGGCTGCTGGATGTCTCCGATGATACTTTTTGGAGAACTGGATGGGTTCACATCAGGGTGCAGCATCAGATGGCATTCATTTTCAATGGTCAAGTTGTCATAGATACATCGCTACCTTTCAGAAGTAACAATTATAGCAAGATTTTAACTGTTAGTCCAATTGCTGTTCCAGCATCAAAGAGAGTTCAATTTAAAGTTAAGGGGGTCAACATGATACGCCCTGCCGCTAGGTTAATGTGTGCTTTAGAAGGAAAATATCTGGCCTGTGAAGATGCTCATGAGTCAATGGATCAATACCCCAAGGAGCTTGATGGACTTCAGTGCATCGGGTTTGCATGTTCTGTCCCTGTGATGAATGGAAGAGGATTTATTGAGATTGAGGACCAGGGTTTGAGTAGCAGCTTTTTTCCTTTCATAGTTGCGGAGGAGGATGTTTGCACAGAAATCTGTGTGCTTGAGCCTCTACTAGAGTTAAGTGAAACTGATCCAGATATTGAAGGGACTGGAAAAATGAAAGCCAAAAGTCAAGCTATGGATTTCATTCATGAAATGGGTTGGCTTCTTCACAGAAGCCAATTGAAATCTAGGATGGTTCACTTGAACTCTAGTGCAGATCTCTTTCCATTAAAACGGTTCAAGTGGCTTATGGAGTTTTCTATGGACCGTGATTGGTGTGCAGTGGTGAAAAAACTGTTGAACCTACTGCTTGATGGAACTGTGAATACAGGGGACCACCCTTCCCTGGATCTTGCACTTTCCGAGATGGGTCTCCTTCACAGAGCTGTAAGGAGAAATAGCACGCAGTTAGTGGAGCTGCTTTTGAGATATGTTCCTGATGAAGACAGGGCTGAAAAGGCACAAGTTAATGGACAGAATCAGAGCTTCTTGTTTAGACCTGATGTTGTTGGTCCTGCTGGTTTGACGCCACTCCATATAGCAGCTGGGAAAGATGGTTCTGAGGATGTACTGGATGCTTTGACCAATGATCCTTGCGAGGTGGGAATTGAGGCATGGAAGAATGCTCGTGACAGCACAGGCTCCACACCCGAGGATTATGCACGTTTACGTGGGCATTATACTTACATTCACTTAGTGCAGAAAAAAATTAACAAGAGACAAGGAGCAGCTCATGTGGTGGTTGAGATTCCAAGCAATCTGACAGAGAGCAATACAAACCAGAAGCAAAATGAACCGTCCACGAGCTTTGAGATTGGAAAGGCTGAAGTACCACGTGGCCAAGGGCACTGTAAACTTTGTGATAGCAAATTTTCTTGTAGAACTGCAGTAGGCAGGTCTTTGGTATACAGACCTGCGATGCTCTCTATGGTGGCCATAGCAGCAGTCTGTGTCTGTGTGGCCCTTTTGTTTAAAAGCTCACCCGAAGTTCTATACATGTTTAAACCCTTCAGATGGGAATCGTTGGATTTCGGAACAAGTTAA 3024 0.4421 MEARFGGEAYHFYGVGASSDLRVVGKRSPEWDLNDWRWDGDLFIASRVNPVPADGVGVGQRFFPLESGIPASNSSSSCSEEADLRNPKGNREGEKKRRVIVLEDDDLNEEAGTLSLKLGGHASPMVDREIAGWDGMNGKKSRVAGGTSNRAVCQVEDCGADLTRAKDYHRRHKVCEMHSKASRALVGNAMQRFCQQCSRFHLLQEFDEGKRSCRRRLAGHNKRRRKTNNEAVPNGSSPNDDQTSSYLLISLLKILSNMHSDRSDQTTDQDLLTHLLRSLANQNSEQGAKNLSNLLQEPENLLREGGSSRKSEMVSTLFSNGSQGSPPVIRPHQTVSMTKMQQQVMHAHDARASDPQLTSSTKPSISNSPPSYSEARDSTARQIKMNNFDLNDVYIDSESDDGMEDLERLPVSTNLVTSSLDYPWTQHDSHQSSPPQTSGNSDSASAHSPSSSSGEAQSRTDRIVFKLFGKEPNDFPLILRAQILDWLSHSPTDIESYIRPGCIVLTIYLRQAEAVWEELCYDLTTSLSRLLDVSDDTFWRTGWVHIRVQHQMAFIFNGQVVIDTSLPFRSNNYSKILTVSPIAVPASKRVQFKVKGVNMIRPAARLMCALEGKYLACEDAHESMDQYPKELDGLQCIGFACSVPVMNGRGFIEIEDQGLSSSFFPFIVAEEDVCTEICVLEPLLELSETDPDIEGTGKMKAKSQAMDFIHEMGWLLHRSQLKSRMVHLNSSADLFPLKRFKWLMEFSMDRDWCAVVKKLLNLLLDGTVNTGDHPSLDLALSEMGLLHRAVRRNSTQLVELLLRYVPDEDRAEKAQVNGQNQSFLFRPDVVGPAGLTPLHIAAGKDGSEDVLDALTNDPCEVGIEAWKNARDSTGSTPEDYARLRGHYTYIHLVQKKINKRQGAAHVVVEIPSNLTESNTNQKQNEPSTSFEIGKAEVPRGQGHCKLCDSKFSCRTAVGRSLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYMFKPFRWESLDFGTS. 1008
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06604 1007 MobiDBLite consensus disorder prediction 353 378 - -
Seca8g06604 1007 MobiDBLite consensus disorder prediction 70 92 - -
Seca8g06604 1007 Gene3D - 753 910 IPR036770 -
Seca8g06604 1007 ProSiteProfiles Zinc finger SBP-type profile. 150 227 IPR004333 GO:0003677
Seca8g06604 1007 MobiDBLite consensus disorder prediction 309 343 - -
Seca8g06604 1007 FunFam Squamosa promoter-binding-like protein 14 144 214 - -
Seca8g06604 1007 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 74 894 IPR044817 GO:0003677
Seca8g06604 1007 Pfam SBP domain 153 226 IPR004333 GO:0003677
Seca8g06604 1007 MobiDBLite consensus disorder prediction 302 378 - -
Seca8g06604 1007 Gene3D - 144 214 IPR036893 GO:0003677|GO:0005634
Seca8g06604 1007 MobiDBLite consensus disorder prediction 423 458 - -
Seca8g06604 1007 SUPERFAMILY SBT domain 151 231 IPR036893 GO:0003677|GO:0005634
Seca8g06604 1007 SUPERFAMILY Ankyrin repeat 782 893 IPR036770 -
Seca8g06604 1007 MobiDBLite consensus disorder prediction 217 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06604 Seca-Chr8 160634821 160645270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06604 1 1007 SBP-box Gene Family AT3G60030 53.914 0.0 971
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca8g06604 SBP 9.5e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06604 - - gmx:100809806 1725.29