Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06602 ATGAGCTGTTTCAGCTGTTGCGAAGAGGATGAGTTCCACAAGGCTGCTGAAAGTGGAGGGTCATATGTTGTAAAAAATCCAGCAGAAATTCCACTCGCAGGGAATGATGGAAATTATCATGCTTCTGAAACTGCAAAGCAGGGTGCTCAAACCATTAAAGCCCAGCCCATTGAAGTTCCTGATATACCGGCTGATGAACTGAAAGAAGTTACAGATAACTTTGGGCAAGATTCTCTGATTGGAGAGGGATCTTATGGAAGAGTATATTATGGTGTTCTTAAAAGTGGGCAGGCTGCAGCAATCAAGAAGTTAGATGCTAGTAAACAGCCTGATGAGGAATTCTTAGCCCAGGTTTCAATGGTATCAAGGCTGAAGCATGAAAATTTTGTTCAGCTGCTTGGGTATTGTGTTGATGGAAACTCCCGTATTCTTGCTTATGAGTTTGCATCTAATGGGTCTCTTCATGATATTTTACATGGCAGAAAAGGTGTTAAAGGAGCACAGCCTGGTCCTGTTTTGACATGGGCACAGAGAGTAAAAATTGCTGTAGGGGCTGCAAGAGGGCTTGAATACTTGCATGAGAAGGCTGATCCCCATATTATACACCGGGACATCAAATCAAGCAATGTGCTAATCTTCGATGATGATGTTGCTAAAATTGCAGATTTTGACTTATCAAATCAGGCTCCGGACATGGCTGCTCGTCTTCATTCCACTCGTGTTCTCGGAACCTTTGGTTATCATGCACCAGAATATGCAATGACTGGACAATTGAACGCTAAGAGTGATGTATACAGTTTTGGTGTTGTCCTTCTGGAACTTTTGACTGGAAGGAAACCTGTTGATCATACACTACCACGTGGACAGCAGAGTCTGGTTACTTGGGCTACGCCGAAACTCAGTGAAGATAAAGTCAGGCAGTGTGTTGATACAAGACTAGGAGGAGAATACCCACCAAAAGCTGTTGCTAAGATGGCTGCTGTTGCTGCATTATGTGTGCAATATGAAGCTGATTTCAGACCAAACATGAGCATTGTAGTCAAAGCTCTTCAACCTTTATTGACTGCACGACCTGGACCTGCTGGTGAAACAGCAAATTGA 1101 0.4332 MSCFSCCEEDEFHKAAESGGSYVVKNPAEIPLAGNDGNYHASETAKQGAQTIKAQPIEVPDIPADELKEVTDNFGQDSLIGEGSYGRVYYGVLKSGQAAAIKKLDASKQPDEEFLAQVSMVSRLKHENFVQLLGYCVDGNSRILAYEFASNGSLHDILHGRKGVKGAQPGPVLTWAQRVKIAVGAARGLEYLHEKADPHIIHRDIKSSNVLIFDDDVAKIADFDLSNQAPDMAARLHSTRVLGTFGYHAPEYAMTGQLNAKSDVYSFGVVLLELLTGRKPVDHTLPRGQQSLVTWATPKLSEDKVRQCVDTRLGGEYPPKAVAKMAAVAALCVQYEADFRPNMSIVVKALQPLLTARPGPAGETAN. 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06602 366 Pfam Protein tyrosine and serine/threonine kinase 78 350 IPR001245 GO:0004672|GO:0006468
Seca8g06602 366 SUPERFAMILY Protein kinase-like (PK-like) 55 350 IPR011009 -
Seca8g06602 366 ProSitePatterns Serine/Threonine protein kinases active-site signature. 200 212 IPR008271 GO:0004672|GO:0006468
Seca8g06602 366 Gene3D Transferase(Phosphotransferase) domain 1 149 358 - -
Seca8g06602 366 SMART serkin_6 74 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06602 366 FunFam PTI1-like tyrosine-protein kinase 3 38 148 - -
Seca8g06602 366 FunFam pto-interacting protein 1 150 361 - -
Seca8g06602 366 ProSiteProfiles Protein kinase domain profile. 74 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06602 366 PIRSF ILK 25 357 - -
Seca8g06602 366 Gene3D Phosphorylase Kinase; domain 1 35 148 - -
Seca8g06602 366 CDD STKc_IRAK 80 353 - -
Seca8g06602 366 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 4 356 - -
Seca8g06602 366 ProSitePatterns Protein kinases ATP-binding region signature. 80 103 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06602 Seca-Chr8 160609243 160611962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06602 65 351 Receptor kinase-like Gene Family AT4G02010 51.546 7.56e-92 288
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Seca8g06602 PK_Tyr_Ser-Thr 8.9e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06602 K13436 - gmx:100808383 674.855