Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06601 ATGGCGAAAGGGAAAGTGATTTTCTCTGGTATATCCCTTGTCCTGGTGGTAGGTGTTGCCATTGGTGTTATTGTTGTTGTTACTAAAAATGATGATACTGATCCTGGGGTAGCATCTCAACAAAAATCTGTGAAGGCCATGTGTGAGACAACTGAAGATCCCAAGCTTTGTCATGATACACTTAGCACTGTTCCTGCCTCCAATGCCTCTGATCCAAAGGCTTATATAGCGGCAGCAGTGGAAGCAGGGGTCAACATTGTCATTAAGGCCTTCAACATGAGTGACAGGCTCTCAGTAGAGCATGGTGAAAAGAACAACACAGGTGGTCTCAAGATGGCTCTTGATGACTGTAAGGACTTAATGGAATTTGCTATGGACAGCATTGAGGCTGCAATTAATTTGGTTCGTGAAAGCAACATACAAGCAATTCATGACAGAACCCCTGACTTTAGGAACTGGTTGAGTGCTATTATCTCATACCAACAATCATGCATGGAAGGTTTTGATAAAGAGAAAGATGGTGAGGAACAGGTGAAGGAACAGTTGAATGAATCAAGTTTGGACACAATGGGGAAGCTCACTGCAATAGTCCTTGACATTGTCACTGATTTGGCTAAAATCCTTCAGAGCTTTAACTTGAAGTTGGATTTAAATCCTGCTTCTCGTCGTCTTCTGGAGGTTGATAGTGAAGGATACCCCACATGGTTCTCAGCTGCAGATCGCAGACTCTTAGCTAAGATGAAAGATGGAGAACAAGTAACACCAAATGCTGTGGTTGCCAAAGATGGAAGTGGTCAATTTAAAACCGTTAAGGATGCTATTGCCTCCTATCCACAGGGTTTCAAAGGCAGATACATTATCTATGTCAAGGCTGGAACCTATGATGAGTACATCACAGTTCCCAAAAAAACAGCTAACCTTCTTATCTATGGTGATGGCCCTACAAAAACCATTATCACTGGTCACAAAAACTATGTTGATGGTGTCAAGACAATGCAAACTGCCACCTTCGCTAACACTGCACCTGGATTCATTGCTAAGTCAATAGCATTTGAGAACACAGCTGGTGCAAGTAAGCATCAAGCAGTGGCGTTTAGAAACCAGGGAGATATGTCAGCTATGTTCGATTGTGCTTTTCATGCTTACCAGGACACTCTGTATGTTCATGCGAATCGTCAATTCTACCGCAACTGTGAAATCTCTGGAACCATTGATTTCATCTTCGGTGCATCAGCAACATTGATCCAGAATTCTAAAATCATTGTGAGGAAGCCAGGGGACAGTCAATTCAACACAGTGACAGCAGATGGTACAAAACAGAAGAACATGGCTACAGGGATTGTGCTCCAGAATTGTGAGATAGTGCCAGAGCAGGAGTTGTTCCCTGACAGGTTTCAAGTGAAATCGTACTTGGGAAGGCCATGGAAGCAATATGCTAGAACAGTGGTTATGGAGTCTAACATTGGTGACTTTATTCAACCAGAAGGGTGGCATGTTTGGGAAGGGGAACAGTTTCTTGACACATTGTACTATGCTGAGTATGCCAACGTTGGACCTGGTGCTGATGTTAAAGGAAGGGTCAAGTGGAAGGGTTACCACCCAAATATCAATAAGGATGAAGCTGCACAATTCACTGCTAGCCAATTCCTCAGAGGTGGACCTTCTGGGAAAGCTGAGGATTGGTTGCAAGCTACTGGCATTCCTTTCAATGCTGGCTTCATCAAGGGTAATTATCGTAGGCTCATGGCTGATGTGAAAGAAGGAGGTTCACTCCCACCTAATGCAGTTGTTGCCAAAGATGGCAGTGGCCAATATAAGACTGTTCAGGATGCTATTAACTCATACCCCAAAGGTCACAAAGGCAGATATGTTATCTACATTAAGGCCGGTATCTATCAAGAGTACATTACGGTTGACAAGAAAAAGCCTAATATTTTCATGTACGGTGATGGCCCTGCAAAAACCGTTATCACAGGTAACAGAAATTTCGTTGATGGTTGGAAGACAATGAGATCCGCTACCTTTTCAACCAAGGCTGAAGATTTCATTGCCAAGTCAATGGGATTTGAGAACAGTGCTGGAGCACATAAACACCAAGCAGTGGCACTTCACGTGCAAGGTGATCGCTCTGCTTTCTTCGATTGCGCAATAAGTGGTTATCAGGACACGTTGTATGTTCACGCTCACCGTCAATTCTACCGTAACTGTGAAATCTCTGGCACCATAGATTTCATTTTCGGTTATGCATCAACCTTGATCCAGAGCTCGAAGCTGATTGTGAGGAAGCCTGATCCTAATCAGCAAAACATAGTGGTAGCTGATGGGACGGCTGAAAAGAACATGCCAACTGGAGTTGTGATTCAGAATTGTGAGATTGTTCCAGAGGCAACCCTCCAACCAGATAGATTAACGGTGAGATCGTACTTGGCGAGGCCATGGAAGGCATATTCAAGGGCAATCTTCTTGGAAACTACCATTGGTGATCTCATTCAGCCTGATGGATATCTTCCATGGTCAGGGAATCAGTTCCTTGACACGTGTTATTTTGCTGAGTATGCTAACACTGGAGCTGGGGCTGATGCTCAGAAAAGAGTCAAGTGGGGCCGTGGACAGCTTACCAAAGAGGATGCTATGCAATACACTGCTGATCAATGGCTCCAAGCCAATACATGGTTGCCAGCCACTGGCATACCTTTTGATCTTGGCTTCACTAAAGCTTGA 2721 0.441 MAKGKVIFSGISLVLVVGVAIGVIVVVTKNDDTDPGVASQQKSVKAMCETTEDPKLCHDTLSTVPASNASDPKAYIAAAVEAGVNIVIKAFNMSDRLSVEHGEKNNTGGLKMALDDCKDLMEFAMDSIEAAINLVRESNIQAIHDRTPDFRNWLSAIISYQQSCMEGFDKEKDGEEQVKEQLNESSLDTMGKLTAIVLDIVTDLAKILQSFNLKLDLNPASRRLLEVDSEGYPTWFSAADRRLLAKMKDGEQVTPNAVVAKDGSGQFKTVKDAIASYPQGFKGRYIIYVKAGTYDEYITVPKKTANLLIYGDGPTKTIITGHKNYVDGVKTMQTATFANTAPGFIAKSIAFENTAGASKHQAVAFRNQGDMSAMFDCAFHAYQDTLYVHANRQFYRNCEISGTIDFIFGASATLIQNSKIIVRKPGDSQFNTVTADGTKQKNMATGIVLQNCEIVPEQELFPDRFQVKSYLGRPWKQYARTVVMESNIGDFIQPEGWHVWEGEQFLDTLYYAEYANVGPGADVKGRVKWKGYHPNINKDEAAQFTASQFLRGGPSGKAEDWLQATGIPFNAGFIKGNYRRLMADVKEGGSLPPNAVVAKDGSGQYKTVQDAINSYPKGHKGRYVIYIKAGIYQEYITVDKKKPNIFMYGDGPAKTVITGNRNFVDGWKTMRSATFSTKAEDFIAKSMGFENSAGAHKHQAVALHVQGDRSAFFDCAISGYQDTLYVHAHRQFYRNCEISGTIDFIFGYASTLIQSSKLIVRKPDPNQQNIVVADGTAEKNMPTGVVIQNCEIVPEATLQPDRLTVRSYLARPWKAYSRAIFLETTIGDLIQPDGYLPWSGNQFLDTCYFAEYANTGAGADAQKRVKWGRGQLTKEDAMQYTADQWLQANTWLPATGIPFDLGFTKA. 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06601 906 Pfam Plant invertase/pectin methylesterase inhibitor 43 200 IPR006501 GO:0004857
Seca8g06601 906 Gene3D - 250 573 IPR012334 -
Seca8g06601 906 Gene3D - 589 903 IPR012334 -
Seca8g06601 906 ProSitePatterns Pectinesterase signature 2. 738 747 IPR033131 -
Seca8g06601 906 FunFam Pectinesterase 40 205 - -
Seca8g06601 906 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 42 204 IPR035513 -
Seca8g06601 906 FunFam Pectinesterase 250 573 - -
Seca8g06601 906 ProSitePatterns Pectinesterase signature 2. 400 409 IPR033131 -
Seca8g06601 906 FunFam Pectinesterase 589 903 - -
Seca8g06601 906 SUPERFAMILY Pectin lyase-like 254 571 IPR011050 -
Seca8g06601 906 SUPERFAMILY Pectin lyase-like 592 901 IPR011050 -
Seca8g06601 906 Gene3D Invertase/pectin methylesterase inhibitor family protein 40 205 IPR035513 -
Seca8g06601 906 NCBIfam pectinesterase inhibitor domain 27 201 IPR006501 GO:0004857
Seca8g06601 906 CDD PMEI-like_3 46 206 - -
Seca8g06601 906 Pfam Pectinesterase 594 888 IPR000070 GO:0030599|GO:0042545
Seca8g06601 906 Pfam Pectinesterase 256 552 IPR000070 GO:0030599|GO:0042545
Seca8g06601 906 SMART PMEI_2 39 200 IPR006501 GO:0004857
Seca8g06601 906 PANTHER PECTINESTERASE 19 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06601 Seca-Chr8 160595804 160605813 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06601 562 903 Carbohydrate Esterase AT3G05610 45.190 3.37e-100 325
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06601 K01051 - gmx:100789650 911.753