Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06596 ATGGCAGCCGCCAAACCAATTGCAGTAGCGGTTTCTCTCATTCTGGTAGTGGGTGTTGTGATCGGTGTTGTTACTGTCCAAAACAAGAGCCCAAAATCAACCAATGAAGGCGGAGAATTGAATACCCACAATAAGGCCGTATCTACCCTCTGCCAAGGCACTGACGACCAGAAACTCTGTCATGATGTCCTTAGCCCCATCAACACCACAGACCCAAAGGATTACGTGGCAGCTGTGGTGAAAACCTCCATGGAAAGCGTTATCAAAGCCTTCAACATGAGCGATAGGCTCACCGTGGAGCATGGAGACAACAACAATGGTGTTAAAATGGCACTTGAAGATTGCAAGGACTTATTGCAATCTGCCATTCAGGAACTCCAAGCCTCAGGTGTTTTGGTTCAGGAAAGCAGCCTTCAAGATATCAACCAACGCGCCGCTGAACTTAAAAACTGGTTAGGTGCTGTTGTTGCCTACCAACAATCTTGCCTTGATGGGTTCAACACAGACGGTGAGAAGGAGGTTCAAACCAAGTTACAATCGGGTAGCTTGGACAACGTTGGAAAACTCACTGGTTTGGCACTTGATATTGTGTCTGGTATCACTAAGATCCTTAGTGCTGTTGATTTGAATTTGGCTCTGAAACCTGCCTCTCGTCGTCTTCTTGAGGTCGATCATGAGGGTTACCCAACTTGGTTCTCTGCTTCTGATCGTAAACTCTTGGAGATGGTCAGCCAAGGAATGGGAGAATCAAATTCAGGCCACAGAAGTGGTGTTGTCGCTAAGGATGGTAGTGGTCAATTCAAAACTATTTTGGATGCTATTAACTCTTACCCCAAAAACCACCAAGGCAGGTTCATTATCTACGTCAAGGCTGGTATCTATAATGAGTACATTCTTGTTGACAAGAAGAAGCCCAACATTCTCTTGTACGGTGATGGCCCTACCAAGACCATTATCACTGGACGCAAAAACTTCCACGAAGCCACTGTTGCTGATGATTTCATTGCCAAGTCAATTTCATTTGAGAACACCGCTGGTCCTGAAGGTCACCAAGCAGTTGCACTCCGTGTGCAGGGTGATCGCTCTGCATTCTTCGATTGTGCTCTGCGTGGTTACCAAGACACCTTGTATGCCCATGCTCATCGTCAATACTACCGCAACTGTGAGATCTCTGGAACCATTGATTTCATCTTTGGCTACTCCACCACCTTGATCCAGAACTCCAAGATCATTATGAGGAAGCCTGGTCCAAACCAACAGAACATTGTGGTGGCTGATGGAACAGACCAGAAGAGCATGCCTACTGGAATTGTCCTTCAAAATTGTGAGATCATGCCATCTCCTGAACTCATGGCTGACAGGTTGACAGTCAAGTCTTACTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCCGTCTTCATTGAAAATGTGATTGGTGATTTGATTCAGCCAGATGGATACATTCCTTGGAATCCAATTGAACCAAACACTCAGAATGCTTACTTTGCTGAGTTTGCCAACACTGGACCCGGTGCCAATGCTCAAGCAAGAGCTAAATGGGGAAAAGGTCTTATTAGCAAGGATGAAGCTGCTAGATTCACTGGGGAAGCTACAATAAAAAAAAGAAAAAAAAAGGATCAACAAAAAGATTATATAACAAAAAAAATGGCAGCCGCCAAACCAATTGCAATAGCGGTTTCTCTCATTCTGGTAGTGGGTGTTGTGATCGGCGTTGTTGCTGTCCAAAACAAGAGCCCAAAATCAACCAATGAAGGTGGAGAATTGAATACCCACAACAAGGCCGTATCTACCCTCTGCCAAGGCACTGACGACCAGAAACTCTGCCATGATGTCCTTAGCCCCATCAACACCACAGACCCAAAGGATTACGTGGCAGCTGTGGTGAAAACCTCCATGGAAAGCGTTATCAAAGCCTTCAACATGAGCGATAGGCTCACCGTGGAGCATGGAGACAACAACAATGGTGTTAAAATGGCACTTGAAGATTGCAAGGACTTATTGCAATCTGCCATTCAAGAACTCCAAGCCTCAGGTGTTTTGGTTCAGGAAAGCAGCCTTCAAGATATCAACCAACGCGCTGCTGAACTTAAAAACTGGTTAGGTGCTGTTGTTGCCTACCAACAATCTTGCCTTGATGGGTTCAACACAGACGGTGAGAAGGAGGTTCAAACCAAGTTACAATCGGGTAGCTTGGACAACGTTGGAAAACTCACTGGTTTGGCACTTGATATTGTGTCTGGTATCACTAAGATCCTTAGTGTTGTTGATTTGAATTTGGCTCTGAAACCTGCCTCTCGTCGTCTTCTTGAGGTCGATCATGAGGGTTACCCAACTTGGTTCTCTGCTTCTGATCGTAAACTCTTGGAGATGGTCAGAAGTGGTGGAGGAATTATGCCCAATGCAGTTGTCGCTAAGGATGGTAGTGGTCAATTCAAAACTATTTTGGATGCTATTAACTCTTACCCCAAAAACCACCAAGGCAGGTTCATTATCTACGTCAAGGTTGGTATCTATAATGAGTACATTCTTGTTGACAAGAAGAAGCCCAACATTCTCTTGTACGGTGATGGCCCTACCAAGACCATTATCACTGGACGCAAAAACTTCCACGAAGGTGTTGCTGATGATTTCATTGCTAAGTCAATTGCATTTGAGAACACCGCTGGTCCTGAAGGTCACCAAGCAGTTGCACTCCGTGTGCAGGGTGATCGCTCTGCATTCTTCGATTGTGCTCTGCGTGGTTACCAAGACACCTTGTATGCCCATGCTCATCGTCAATACTACCGCAACTGTGAGATCTCTGGAACCATTGATTTCATCTTTGGCTACTCCACCACCTTGATCCAGAACTCCAAGATCATTATGAGGAAGCCTGGTCCAAACCAACAGAACATTGTGGTGGCTGATGGAACAGACCAGAAGAGCATGCCTACTGGAATTGTCCTTCAAAATTGTGAGATCATGCCATCTCCTGAACTCATGGCTGACAGGTTGACAGTCAAGTCTTACTTGGCAAGGCCATGGAAGGCATTCTCAAGGGCCGTCTTCATTGAAAATGTGATTGGTGATTTGATTCAGCCAGATGGATACATTCCTTGGAATCCAATTGAACCAAACACTCAGAATGCTTACTTCGCTGAGTTTGCCAACACTGGACCCGGTGCCAATGCTCAAGCAAGAGCTAAATGGGGAAAAGGTCTTATTAGCAAGGATGAAGCTGCTAGATTCACTGCTGAGCCTTGGCTCCAGGCTAGCACTTGGTTGCCTGCAACTGGCATTCCTTTTGATGCTACCTTCACCAAGGCTTAA 3330 0.4577 MAAAKPIAVAVSLILVVGVVIGVVTVQNKSPKSTNEGGELNTHNKAVSTLCQGTDDQKLCHDVLSPINTTDPKDYVAAVVKTSMESVIKAFNMSDRLTVEHGDNNNGVKMALEDCKDLLQSAIQELQASGVLVQESSLQDINQRAAELKNWLGAVVAYQQSCLDGFNTDGEKEVQTKLQSGSLDNVGKLTGLALDIVSGITKILSAVDLNLALKPASRRLLEVDHEGYPTWFSASDRKLLEMVSQGMGESNSGHRSGVVAKDGSGQFKTILDAINSYPKNHQGRFIIYVKAGIYNEYILVDKKKPNILLYGDGPTKTIITGRKNFHEATVADDFIAKSISFENTAGPEGHQAVALRVQGDRSAFFDCALRGYQDTLYAHAHRQYYRNCEISGTIDFIFGYSTTLIQNSKIIMRKPGPNQQNIVVADGTDQKSMPTGIVLQNCEIMPSPELMADRLTVKSYLARPWKAFSRAVFIENVIGDLIQPDGYIPWNPIEPNTQNAYFAEFANTGPGANAQARAKWGKGLISKDEAARFTGEATIKKRKKKDQQKDYITKKMAAAKPIAIAVSLILVVGVVIGVVAVQNKSPKSTNEGGELNTHNKAVSTLCQGTDDQKLCHDVLSPINTTDPKDYVAAVVKTSMESVIKAFNMSDRLTVEHGDNNNGVKMALEDCKDLLQSAIQELQASGVLVQESSLQDINQRAAELKNWLGAVVAYQQSCLDGFNTDGEKEVQTKLQSGSLDNVGKLTGLALDIVSGITKILSVVDLNLALKPASRRLLEVDHEGYPTWFSASDRKLLEMVRSGGGIMPNAVVAKDGSGQFKTILDAINSYPKNHQGRFIIYVKVGIYNEYILVDKKKPNILLYGDGPTKTIITGRKNFHEGVADDFIAKSIAFENTAGPEGHQAVALRVQGDRSAFFDCALRGYQDTLYAHAHRQYYRNCEISGTIDFIFGYSTTLIQNSKIIMRKPGPNQQNIVVADGTDQKSMPTGIVLQNCEIMPSPELMADRLTVKSYLARPWKAFSRAVFIENVIGDLIQPDGYIPWNPIEPNTQNAYFAEFANTGPGANAQARAKWGKGLISKDEAARFTAEPWLQASTWLPATGIPFDATFTKA. 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06596 1109 FunFam Pectinesterase 251 555 - -
Seca8g06596 1109 Pfam Plant invertase/pectin methylesterase inhibitor 601 751 IPR006501 GO:0004857
Seca8g06596 1109 Pfam Plant invertase/pectin methylesterase inhibitor 46 196 IPR006501 GO:0004857
Seca8g06596 1109 SUPERFAMILY Pectin lyase-like 807 1104 IPR011050 -
Seca8g06596 1109 FunFam Pectinesterase 802 1106 - -
Seca8g06596 1109 ProSitePatterns Pectinesterase signature 2. 940 949 IPR033131 -
Seca8g06596 1109 FunFam Pectinesterase 43 201 - -
Seca8g06596 1109 ProSitePatterns Pectinesterase signature 2. 390 399 IPR033131 -
Seca8g06596 1109 PANTHER PECTINESTERASE 570 1096 - -
Seca8g06596 1109 FunFam Pectinesterase 598 756 - -
Seca8g06596 1109 Pfam Pectinesterase 807 1091 IPR000070 GO:0030599|GO:0042545
Seca8g06596 1109 Pfam Pectinesterase 258 540 IPR000070 GO:0030599|GO:0042545
Seca8g06596 1109 Gene3D Invertase/pectin methylesterase inhibitor family protein 596 756 IPR035513 -
Seca8g06596 1109 Gene3D Invertase/pectin methylesterase inhibitor family protein 41 201 IPR035513 -
Seca8g06596 1109 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 599 755 IPR035513 -
Seca8g06596 1109 CDD PMEI-like_3 604 757 - -
Seca8g06596 1109 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 44 200 IPR035513 -
Seca8g06596 1109 Gene3D - 802 1106 IPR012334 -
Seca8g06596 1109 Gene3D - 253 554 IPR012334 -
Seca8g06596 1109 SMART PMEI_2 42 196 IPR006501 GO:0004857
Seca8g06596 1109 SMART PMEI_2 597 751 IPR006501 GO:0004857
Seca8g06596 1109 SUPERFAMILY Pectin lyase-like 258 540 IPR011050 -
Seca8g06596 1109 CDD PMEI-like_3 49 202 - -
Seca8g06596 1109 NCBIfam pectinesterase inhibitor domain 582 751 IPR006501 GO:0004857
Seca8g06596 1109 NCBIfam pectinesterase inhibitor domain 31 196 IPR006501 GO:0004857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06596 Seca-Chr8 160546520 160551717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06596 1 534 Carbohydrate Esterase AT3G62170 41.812 8.59e-129 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06596 K01051 - gmx:100808559 888.256