Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06586 ATGGAAAACCACCACGAAATGCAACAACAACGCCGTGAATTGACTTTCTTAAGCTCCGCAGACTTCCTCCGCTCGAATCTAGATCCAACAACTACCGATGCTGCTTCCATCAAAGAAGTCGATTTCTTATCATCAGCTTCACCTTCCAACCATAATGACCACCACCAGCCTCATCATGATCAAGATGATCCGCATCATCGTCAACTCACCGCGCTGAATTTAACATGTGCGAGTGTGGGAATGTCAAGAGCAGCAAATGATGAAAATCCTCACACTACGTTGAGGACACTTCAAAAGGAATTACTAAGGGTAAAGGAAGAGAATTGCAAGCTGAGAACTATGCTGGACCAAATTACCAAAAACTATAGTCAACTACAACTGTTCATCGCTTTCCAGAAACAAAGGCCTTGTCAGAAGGTGGAGACAAATGGGGTGAAGTCAGGTCAACAATTTCTGGACCCACGGCCATGCACCAAATTAGACGCTAATAATGTTGGATCAGTTACTGATGATAAGACTTGTCAAGAGGTATCGGTCCCTCCCTCAAATGATACATCAAAGCAAAGTGACCACCATTTGACTAAATCCAATATTGGAACGCAGGTTTGTCCTCCTGCAGAAGATGTTCTTGACCAATCATCCTCACCGAGTTGGGACTCATCCAAGTTAGAAGAATCCAAAATTCCTTTCCGAAAAACCAGGGTTTCCGTTCGTGCAAGATCCGAAGCTCCTCTGATTAACGATGGATGTCAGTGGAGGAAATATGGGCAAAAGTTGGCCAAGGGTAACCCTTGTCCTCGTGCCTATTATCGCTGTACCATGGCTGCAGGATGCCCGGTTCGTAAGCAGGTGCAAAGATGCGCAGATGACAAAACGGTTTTAATAACAACTTATGAAGGGAATCATAACCACCCTCTCCCACCAGCAGCAACTGCCATGGCCAATTCTACATCAGCAGCTGCGGCCATGCTGTTATCCGGTTCAGGTTCATCAATGAGCCACAACGAAACGCTAATGAACTCTTCTGGATATTTCTCTCCACTTCCCTGCGTTTCAATGTCACCATCTGCACCATTCCCTACCATCACCCTTGACATGACCCACCCCATGCAGTTGCACCGAGATCCCTCCTCCTTCCCTGTTCCATTCCATGCATCTGCTATTCCTATTCCTCAGTTACTAGGCCACCCTGTTATCTTCCCTCAGAAGCTTCCACCTCCGCCCCTAATTCAACGACAACCTTCCTCTATGCTGGATACTGTCACTGAAGCTATTGCTTCCGATCCAAACTTCACTGCAGCGCTGGCAGCTGCAATCTCATCCTTTATTGGACCACCAAGAGGAAGTAGTGATGGAAATAACAACAATGGCGGAAGGTCCATGCAACTTCCGCAACCATGTACACTACATATCAAGTCACCAACTAGCTAG 1431 0.4647 MENHHEMQQQRRELTFLSSADFLRSNLDPTTTDAASIKEVDFLSSASPSNHNDHHQPHHDQDDPHHRQLTALNLTCASVGMSRAANDENPHTTLRTLQKELLRVKEENCKLRTMLDQITKNYSQLQLFIAFQKQRPCQKVETNGVKSGQQFLDPRPCTKLDANNVGSVTDDKTCQEVSVPPSNDTSKQSDHHLTKSNIGTQVCPPAEDVLDQSSSPSWDSSKLEESKIPFRKTRVSVRARSEAPLINDGCQWRKYGQKLAKGNPCPRAYYRCTMAAGCPVRKQVQRCADDKTVLITTYEGNHNHPLPPAATAMANSTSAAAAMLLSGSGSSMSHNETLMNSSGYFSPLPCVSMSPSAPFPTITLDMTHPMQLHRDPSSFPVPFHASAIPIPQLLGHPVIFPQKLPPPPLIQRQPSSMLDTVTEAIASDPNFTAALAAAISSFIGPPRGSSDGNNNNGGRSMQLPQPCTLHIKSPTS. 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06586 476 Gene3D WRKY domain 231 308 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g06586 476 PANTHER WRKY TRANSCRIPTION FACTOR 36-RELATED 80 455 IPR044810 GO:0003700
Seca8g06586 476 SUPERFAMILY WRKY DNA-binding domain 239 307 IPR036576 GO:0003700|GO:0006355|GO:0043565
Seca8g06586 476 Pfam WRKY DNA -binding domain 247 305 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06586 476 FunFam probable WRKY transcription factor 31 231 308 - -
Seca8g06586 476 SMART WRKY_cls 246 306 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06586 476 MobiDBLite consensus disorder prediction 44 65 - -
Seca8g06586 476 MobiDBLite consensus disorder prediction 443 476 - -
Seca8g06586 476 ProSiteProfiles WRKY domain profile. 241 307 IPR003657 GO:0003700|GO:0006355|GO:0043565
Seca8g06586 476 MobiDBLite consensus disorder prediction 172 222 - -
Seca8g06586 476 MobiDBLite consensus disorder prediction 446 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06586 Seca-Chr8 160416198 160418882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06586 97 443 WRKY Transcription Factor Family AT4G04450 41.117 7.01e-77 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Seca8g06586 WRKY 1.2e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06586 - - gmx:100817839 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06586 8 160416198 160418882 Seca2g05179 2 138225097 138228152 PCT