Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06584 ATGGGCAAAGGCAAAGCCTCTAGTTCTTCCTCCTCATCTATCAGCAGCAACAGAAAGCCTGTTATCTCAACTGCATCCTCTCTTACACAACAAAATACTGAAGACCTTCACACAGATCTTAGGCTTGGACTAAGCATTTCTGCCACTCAACATCTTGGCCCTTCAACTTCAAGGGGGTATTGGCAACCAACATATCTAAGTGGTTCACAAGGTGCTGAAGTGAATGATTGCAGCGATCATAACAGCTTCTTTGTGAAGGTCTACATGGAAGGCATTCCAATTGGAAGAAAACTCAACTTGTTAGCTCATGATGGTTACCAAGAGTTAGTAAAGACTCTTGAACAAATGTTTGACACTACCATTCTCTGGGGAACTGAGATGGATGGAGTGCAATCAGAGAGATGTCACGTGCTAACTTATGAAGATGGAGAAGGAGACTTGATTATGGTTGGGGACGTGCCTTGGGAGTAA 471 0.4352 MGKGKASSSSSSSISSNRKPVISTASSLTQQNTEDLHTDLRLGLSISATQHLGPSTSRGYWQPTYLSGSQGAEVNDCSDHNSFFVKVYMEGIPIGRKLNLLAHDGYQELVKTLEQMFDTTILWGTEMDGVQSERCHVLTYEDGEGDLIMVGDVPWE. 157
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06584 156 Gene3D - 76 156 - -
Seca8g06584 156 Pfam AUX/IAA family 73 156 IPR033389 -
Seca8g06584 156 MobiDBLite consensus disorder prediction 1 30 - -
Seca8g06584 156 ProSiteProfiles PB1 domain profile. 82 156 IPR000270 GO:0005515
Seca8g06584 156 SUPERFAMILY CAD & PB1 domains 78 156 - -
Seca8g06584 156 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 61 155 IPR003311 GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06584 Seca-Chr8 160335259 160337105 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06584 86 155 B3 DNA Binding Superfamily AT4G23980 37.143 1.75e-10 56.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Seca8g06584 AUX_IAA 3.7e-21 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06584 K14484 - gmx:100781660 241.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06584 8 160335259 160337105 Seca2g05182 2 138264464 138265133 PCT