Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06581 ATGGCTGAGAAGATACTTGACTCCACCCGAGCAGTGACAACCAGAAGCTCCTCCTATCTAACTTCCATTTTTGGCAACGGTTCCCTGGAGCTCGCAAGGAAAAATGGTCAAATTAATGTGCAAGGAGGTTCATTATCAGGTGTCACACCAAAGACTCACTCGTATTCAATAAACCCTTCCCAAGCAAATTATGAAGATGCCTGCATTGCAAAAAGTGCAAGGTTAAACACTGGAGGATCAGGACCTCATCATTCAGTTATTACAAGGAATAGTTACTTGTGCACATCTTCCACACAGCACTGCCTCTGTTCACCTCCGCTCAAGAAACCAAGAATAATGGATTCAAGCCAAACACCAGCAACAAACTCTCAGAATAAACAAGACTTGGGAAAGGTTCATTTCTCCAACACTTTAACACCAAACTGTGTCTCCTTTGTTTCAAGAAGTCAGGAAACACCTCCTGACGAACAGTCTGAAGCTGTTGGTCATTATGATAACCAAACCTCAAGCTCAGCAGGACTTAAAGCAAAGAGAAAAGTTGATACTAACTATTGTGATGAACAATCTTCTTCCCTATGCTCGCTTGCAGCCTCAAATAACATTGATACTTGTAGCAGCAAACATGATGATAACGATGACTCAACATATTTAAGCGATAATGATGAAGAACCAGATGAGAAGCTTGCTCAGGAGGGCACCAGAGTCAAGAGAAGGAGGAATGCAAACAGTCATAGTTTATATGAAAGGAAGCGAAGAAATAAGATCAACAAGAAGATGCGTATGTTGAAAGAGCTCATACCCAATTGCAATAAGATGGACAAGGCTTCAATGCTTGATGATGCCATCGAATATCTCAAGACCCTACAGCTTCAGTTACAGGTAATTAAGTTTATATATAAGCCTTTTCCTTTCATCTCAGGCCTTGTGTTAAACAGTCATTTGGATGTGCTAATTAAGGTTAGTGTTATGATGCAGATTATGTCAATGGGTGCTGGGCTTTTTATGCCTTTTATGATGTTACCTACTGCCACTCATCCTATGATCAACACACCCCAATTGCCTCAGTTAATGGGCTTCAGGCCAGGCACAGGCATCTCTTTCAGCCTACCTCAGTTCCCTATTGCACCTTTCACTGACAACAGAGTTCGGATGTTTGGCCTCCCTAACCAGGTGCCATCCATGCCGATTTCTCATGCACCGTTCATTCCTATGGTTGGAAATCCTTCTACACAACCACTTCTGGCAGAAAACCAAGCTTCTTCCCAGTTAACAACTATAATGTCCTCAGTCCCCAACAACTCATATCTCAATGGAAAGGCTCAAACTCAACAAAGCAAGCACTGA 1344 0.4226 MAEKILDSTRAVTTRSSSYLTSIFGNGSLELARKNGQINVQGGSLSGVTPKTHSYSINPSQANYEDACIAKSARLNTGGSGPHHSVITRNSYLCTSSTQHCLCSPPLKKPRIMDSSQTPATNSQNKQDLGKVHFSNTLTPNCVSFVSRSQETPPDEQSEAVGHYDNQTSSSAGLKAKRKVDTNYCDEQSSSLCSLAASNNIDTCSSKHDDNDDSTYLSDNDEEPDEKLAQEGTRVKRRRNANSHSLYERKRRNKINKKMRMLKELIPNCNKMDKASMLDDAIEYLKTLQLQLQVIKFIYKPFPFISGLVLNSHLDVLIKVSVMMQIMSMGAGLFMPFMMLPTATHPMINTPQLPQLMGFRPGTGISFSLPQFPIAPFTDNRVRMFGLPNQVPSMPISHAPFIPMVGNPSTQPLLAENQASSQLTTIMSSVPNNSYLNGKAQTQQSKH. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06581 447 PANTHER TRANSCRIPTION FACTOR PIF3 324 438 IPR044273 GO:0003700|GO:0006355
Seca8g06581 447 MobiDBLite consensus disorder prediction 146 176 - -
Seca8g06581 447 Gene3D - 229 289 IPR036638 GO:0046983
Seca8g06581 447 SMART finulus 245 294 IPR011598 GO:0046983
Seca8g06581 447 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 238 298 IPR036638 GO:0046983
Seca8g06581 447 CDD bHLH_AtPIF_like 239 294 IPR047265 -
Seca8g06581 447 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 239 288 IPR011598 GO:0046983
Seca8g06581 447 MobiDBLite consensus disorder prediction 146 179 - -
Seca8g06581 447 Pfam Helix-loop-helix DNA-binding domain 242 289 IPR011598 GO:0046983
Seca8g06581 447 MobiDBLite consensus disorder prediction 203 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06581 Seca-Chr8 160306248 160308882 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06581 153 359 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G46970 37.054 6.75e-28 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g06581 HLH 3.8e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06581 K12126 - gmx:100818543 367.851
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06581 8 160306248 160308882 Seca2g05183 2 138278639 138281842 PCT