Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06578 ATGGGAAGGCACTCATGCTGTTACAAGCAGAAGCTTCGGAAGGGTCTCTGGTCCCCTGAGGAGGATGAAAAACTTCTCAAGCATATTACTAAGTATGGCCATGGATGTTGGAGTTCTGTTCCTAAGCAAGCAGGTTTGCAAAGGTGTGGTAAGAGCTGTAGGCTTAGGTGGATCAATTATTTAAGGCCTGATTTAAAGAGAGGAACATTCTCACAAGAAGAAGAAAATCTCATCATTGAACTTCATGCTGTATTAGGAAATAGATGGTCTCAAATTGCGGCTCAATTGCCTGGAAGGACTGACAATGAAATAAAGAATCTGTGGAACTCTTGCTTGAAGAAAAAACTGAGGCAAAAAGGTATAGACCCTGTCACTCATAAACCACTGTCCCAGGGTGAGAATGGAGAGGACAATGCTAGGAGCCAAGAGAAAGCACCAGAAGTTTCCAATGAATTGAATTTGAACCTCCTGAAATCAGAGAGCTCTAAGTCAGATGCAGCTTCCTATGAGCAGAGAACATCTTCAATTTCCCCAAAAACCTATACACCTGAGATAGAAGGTTCTTGCAACTCCAAGATTTACAGCAAAAGTGAGATAACCAATTGTTGTAGCAAGGACTTATTCCTAGACAGGTACATGAGCAATCGCCAGGAGAGCTACACCACCAGTTGCCAGCCCTCAGATTTGATGGGGAATTTTCCCCTTCAGATGAGTTATGCAACCACTGATTGTCTCCCAATTGATTCAAACTCTAGCCATTGGTTTAACCAAACTGGAAATGGAAGGCCTTTTGATATGAACTCTGAATTTCCTTTAAATGCCACTTCCATTCTTACACCTACAACCACCAGCTTGTTTCTTCCTAGTTCTTTTTGCTACAAGCCTTCACTTGCTGTTCCTTCTGACAATATTTCTACAGCCTGTGGATCCCATTACTGGGAAGCCAGTGCCTCCAACAACAGCAATAGAAGTAATAGCAGCACAGAGTTGAGAAGTAGCAGCCCCTTAAACATGCAGAATGGTATCCTTTCTTCTTGGGGATTGGCAGATTCTAGCAACTCTACAAAAGAGGCCCAAATTCATATGATGGAAAATCATACAGAACAAGCCAGGTGGGATGAGTACCTTCACAACCCAATCTTTATGCTGGCTTCTGTACAAAATGAAGCTCCTGAATCTTTATGCAATGAGATAAAGCCCACCATGCATTTGGTACCTGATACTTTAGGGGCTATTTTGCCTCATACCAAGCAGCAAGAACAATCCCAAACTTCTAGCATCTTCTCTAAGGATATCCAGAAGCTCAGAGCAGCCTTTGGACATATATAG 1329 0.4251 MGRHSCCYKQKLRKGLWSPEEDEKLLKHITKYGHGCWSSVPKQAGLQRCGKSCRLRWINYLRPDLKRGTFSQEEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQKGIDPVTHKPLSQGENGEDNARSQEKAPEVSNELNLNLLKSESSKSDAASYEQRTSSISPKTYTPEIEGSCNSKIYSKSEITNCCSKDLFLDRYMSNRQESYTTSCQPSDLMGNFPLQMSYATTDCLPIDSNSSHWFNQTGNGRPFDMNSEFPLNATSILTPTTTSLFLPSSFCYKPSLAVPSDNISTACGSHYWEASASNNSNRSNSSTELRSSSPLNMQNGILSSWGLADSSNSTKEAQIHMMENHTEQARWDEYLHNPIFMLASVQNEAPESLCNEIKPTMHLVPDTLGAILPHTKQQEQSQTSSIFSKDIQKLRAAFGHI. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06578 442 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca8g06578 442 FunFam Myb transcription factor 11 67 - -
Seca8g06578 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca8g06578 442 MobiDBLite consensus disorder prediction 122 149 - -
Seca8g06578 442 FunFam MYB transcription factor 68 140 - -
Seca8g06578 442 CDD SANT 17 61 IPR001005 -
Seca8g06578 442 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca8g06578 442 Gene3D - 69 145 - -
Seca8g06578 442 SMART sant 13 63 IPR001005 -
Seca8g06578 442 SMART sant 66 114 IPR001005 -
Seca8g06578 442 Gene3D - 11 67 - -
Seca8g06578 442 MobiDBLite consensus disorder prediction 161 181 - -
Seca8g06578 442 CDD SANT 69 109 IPR001005 -
Seca8g06578 442 PANTHER MYB DOMAIN PROTEIN 55 1 353 - -
Seca8g06578 442 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca8g06578 442 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca8g06578 442 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca8g06578 442 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06578 Seca-Chr8 160246281 160248695 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06578 1 441 MYB Transcription Factor Family AT1G09540 41.071 1.38e-91 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g06578 Myb_DNA-binding 1.2e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06578 K09422 - gmx:100815881 672.159