Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06571 ATGACATGTACTAATGCTTCAGAAAATGAGCTGCAAGCCGAAGTGACACACAAATGTTTCTTTGATATAGAAGTTGGGGGTGAACCTCTTGGCAGGATTGTTTTTGGCCTATTTGGAGAGGTTGTTCCTAAAACAGCTGAGAATTTCCGAGCTTTGTGCACAGGCAAGCAAACAAATTTTGCTACAACATTGGAGCTGAATAATCTTTGTGCAGGAGAGAAAGGATACGGTTACAAAGGAAGCTACTTCCATCAATTAATCAAAGATTTCATGTGTCAGGGAGGGGACTTCACTGAAGGAAATGGAACTGGAGGAGTCAGTATCTATGGTTCGTCATTTAAAGATGGGAGTTTTGCTTTGAAGCATGTTGGTCCTGGAGTTTTGAGCATGGCAAATGCTGGTCCAAATACCAATGGTAGTCAATTTTTTATTTGCACTGTAAAGACTCCATGGTTAGACAATCGCCATGTTGTGTTTGGACATGTCATTGATGGAATGGATATTGTGAGGACACTTGAATCGCAGGAGACAAGCAAGTTAGATAATAGACCCCGGAAGCCATGCAAAATTGCTAATTCTGGAGAACTGCCTATAGATGGTTGA 603 0.4129 MTCTNASENELQAEVTHKCFFDIEVGGEPLGRIVFGLFGEVVPKTAENFRALCTGKQTNFATTLELNNLCAGEKGYGYKGSYFHQLIKDFMCQGGDFTEGNGTGGVSIYGSSFKDGSFALKHVGPGVLSMANAGPNTNGSQFFICTVKTPWLDNRHVVFGHVIDGMDIVRTLESQETSKLDNRPRKPCKIANSGELPIDG. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06571 200 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 18 196 - -
Seca8g06571 200 SUPERFAMILY Cyclophilin-like 11 196 IPR029000 -
Seca8g06571 200 MobiDBLite consensus disorder prediction 177 200 - -
Seca8g06571 200 PIRSF Peptidylpro_ismrse 7 199 IPR024936 GO:0003755
Seca8g06571 200 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 37 52 IPR002130 GO:0000413|GO:0003755
Seca8g06571 200 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 141 153 IPR002130 GO:0000413|GO:0003755
Seca8g06571 200 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 154 169 IPR002130 GO:0000413|GO:0003755
Seca8g06571 200 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 126 141 IPR002130 GO:0000413|GO:0003755
Seca8g06571 200 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 83 95 IPR002130 GO:0000413|GO:0003755
Seca8g06571 200 Gene3D - 4 199 IPR029000 -
Seca8g06571 200 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 21 193 IPR002130 GO:0000413|GO:0003755
Seca8g06571 200 FunFam Peptidyl-prolyl cis-trans isomerase 12 196 - -
Seca8g06571 200 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 20 195 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06571 Seca-Chr8 160190617 160193814 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06571 31 190 U-box Gene Family AT5G67530 39.752 3.11e-25 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06571 K03768 - gmx:100785805 315.079