Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06568 ATGGGTAATGGTACTTCTCGTGTTGTTGGCTGTTTGGTGCCATTCAATGGCAAAAGTGGGGTTGATTTGGAGTTTTTAGAGCCATTCGATGAAGGGTTAGGCCATTCATTCTGTTATGTGAGGCCATCCATTTTTGAATCTCCTGCCATTAGCCCATCAAACTCTGAGAGGTTTACAGTTGATTCCAGTACCCTTGATTCTGAAACCTTGAGTGGATCCTTTAGGCATGATAGCATGGAAGATTCTACTGGCATACACAAGCCAGGTAAGAATTTTCCAGAAACCACATTCAAAACCATTTCAGGGGCTTCTGTTAGTGCTAATGTTTCCACTGCAAGGACTGGTAACCAGAGTGCATTGTTTGCTAGTGATGTCCTGGAACCTGCTGCATCATTTGAGGGAACTGCTTCATTTGCTGCAATCCCTCTGCAGCCCGTTCCACGTGGTTCTGGACCTTTGAATGGTTTCATGTCTGGACCTCTGGAGAGAGGTTTTGCCTCAGGTCCATTGGATAGAGGTGGTGGATTCATGTCTGGGCCAATAGAGAAGGGAGTCATGTCAGGTCCTCTTGATGCCACTGACAAGTCCAATTTTTCAGCACCCCTTGCACGCAGTCGTCGAAGGCCACGTCTACAACATCTCATGAGAAGTGTCAGTGGACCAATGAAGAACACTTTATCCCGGACCTTCTCTAAACATTCCATGGGTGGCAGTTGGATGCAAAGGTTATTCTTACACCCAGTGACTCAACTAGCCTGGCATTCCAAAGACACAAAGTTTCGACCAGAAGTCTCTAGGAACTGTATTGAAGTTGGACCATATGAAGCGGAGTATAAGCATACACACAATTTGCAGTGGGCTCAAGGCAAGGCTGGTGAAGACAGGGTTCATGTAGTGCTTTCGGAAGAACAAGGGTGGTTGTTTATTGGGATTTATGATGGTTTTAGTGGACCTGATGCACCTGATTTTCTGATGAGCCATCTTTATAGATTTATAGACAAGGAATTGGAAGGTTTACTTTGGGATTATGAAGATAAACCTGTAGATCCACTTAATCCTGAAGTCCCTGAAACTGTAAAAGCTGTGGTTGCTCCAGAATGCAGTAGGCAGGAATTGTCTAATATTCATACTAATTCAAATCAAGAAAGTTTAGAAGCTTCTTCTGGTCCTGTAATGATCAATGATCAATCATCTAACAGTGAGATAGTTGAGGAAAATGCTGAAGTTAAGGTGAATGTTGAACACCAGTTACCTAATTGTGGAAGTCCTAGTATCTCGTGTACTGTTCCACCTTCTGTTCAACTCGGACAGTTGACTGGAAAAGGTAGAAAAAGTTTGCGGCTTTATGAGCTACTTCAGATGGAATCTTGGGATGAACAAGGTTTTTGGTCAGTCTCAGAACAGTGTAAAGATTCTTCAGTTCCTAGGGAACCAACAGTAGATGGGCAGATGAGACCTTGCTCATCTAATGTGAAAGAAGATAGATCTAGACATCAGGATGAAGGTCCCACTACATCAGGAGAAAATGGAGGCACTAGGTTTGATTCAACCAACCAGGAGCCTGAAGCTGTTTTTTCTGTTTCAGGACAAAGGCAGAATTCAAGAAAGTCATTTATAAGTACAAAAATAAAAAAAATGTACAGGAAGCCAAAGTCCTTGTGTAAGAAACTTTTTCCTTGGAGTTATGATTGGCATAGGGAGGAAAGTTCTATTGATGAGAAAATATTGGAAGCCTCAGGACCAATTAGAAAATGTAAGTCTGGAGTAGATCATAATGCGGTTTTAAGAGCAATGGCCCGAGCTCTTGAAAAAACAGAAGAGGCATACATGGAAATGGTAGAGCATAATCTGGACAAAACTCCAGAGCTTGCTTTAATGGGATCATGTGTTTTAGTGATGCTGATGAAGGATCAAGATGTTTATGTCATGAACCTTGGAGATAGTCGTGTGATTTTGGCTCAAGAAAGACCAAATGATCGTCATCCTAATCCAAGTTTTCTCAAGGATGATGTGAGGCATAAAAATCGATCTAGAGAGTCATTAGTACGCATGGAGTTAGATAGGATTTCAGAGGAGTCCCCAATTCACAACCAAAACAATCATGTTAACAAGATGAACAAAAACCGAGAGATATCCATTTGTAGATTAAAAATGAGAGCTCTTCAGCTTTCCACAGATCACTGTACAGGTGTTGAAGAGGAAGTTTTTAGAATAAGAGCAGAACACCCTGATGATAATCAAGCCATATTAAATGATCGAGTGAAAGGACATTTAAAAGTCACCAGAGCATTTGGTGCTGGGTTCTTGAAGAGGGTCAGTTGA 2322 0.4182 MGNGTSRVVGCLVPFNGKSGVDLEFLEPFDEGLGHSFCYVRPSIFESPAISPSNSERFTVDSSTLDSETLSGSFRHDSMEDSTGIHKPGKNFPETTFKTISGASVSANVSTARTGNQSALFASDVLEPAASFEGTASFAAIPLQPVPRGSGPLNGFMSGPLERGFASGPLDRGGGFMSGPIEKGVMSGPLDATDKSNFSAPLARSRRRPRLQHLMRSVSGPMKNTLSRTFSKHSMGGSWMQRLFLHPVTQLAWHSKDTKFRPEVSRNCIEVGPYEAEYKHTHNLQWAQGKAGEDRVHVVLSEEQGWLFIGIYDGFSGPDAPDFLMSHLYRFIDKELEGLLWDYEDKPVDPLNPEVPETVKAVVAPECSRQELSNIHTNSNQESLEASSGPVMINDQSSNSEIVEENAEVKVNVEHQLPNCGSPSISCTVPPSVQLGQLTGKGRKSLRLYELLQMESWDEQGFWSVSEQCKDSSVPREPTVDGQMRPCSSNVKEDRSRHQDEGPTTSGENGGTRFDSTNQEPEAVFSVSGQRQNSRKSFISTKIKKMYRKPKSLCKKLFPWSYDWHREESSIDEKILEASGPIRKCKSGVDHNAVLRAMARALEKTEEAYMEMVEHNLDKTPELALMGSCVLVMLMKDQDVYVMNLGDSRVILAQERPNDRHPNPSFLKDDVRHKNRSRESLVRMELDRISEESPIHNQNNHVNKMNKNREISICRLKMRALQLSTDHCTGVEEEVFRIRAEHPDDNQAILNDRVKGHLKVTRAFGAGFLKRVS. 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06568 773 SMART PP2C_4 277 772 IPR001932 -
Seca8g06568 773 Gene3D - 259 418 IPR036457 -
Seca8g06568 773 MobiDBLite consensus disorder prediction 488 502 - -
Seca8g06568 773 PANTHER PROTEIN PHOSPHATASE 2C 280 770 IPR015655 GO:0004722|GO:0006470
Seca8g06568 773 FunFam Protein phosphatase 2C 32 254 422 - -
Seca8g06568 773 MobiDBLite consensus disorder prediction 70 92 - -
Seca8g06568 773 Pfam Protein phosphatase 2C 603 665 IPR001932 -
Seca8g06568 773 Pfam Protein phosphatase 2C 713 771 IPR001932 -
Seca8g06568 773 Gene3D - 514 773 IPR036457 -
Seca8g06568 773 SUPERFAMILY PP2C-like 289 770 IPR036457 -
Seca8g06568 773 MobiDBLite consensus disorder prediction 469 518 - -
Seca8g06568 773 MobiDBLite consensus disorder prediction 503 518 - -
Seca8g06568 773 ProSiteProfiles PPM-type phosphatase domain profile. 277 773 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06568 Seca-Chr8 160159711 160162667 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06568 1 771 PP2C-type Phosphatase Gene Family AT2G46920 61.905 0.0 901
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06568 - - pcin:129315875 1235.71