Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06549 ATGGGTATTAAGGGTTTAACAAAGCTTTTAGCTGACAATGCCCCCAAAGCCATGAAAGAGAATAAATTCGAGAGCTACTTTGGCCGCAAGATCGCCGTTGACGCCAGCATGAGCATTTACCAGTTCCTTATTGTAGTGGGAAGAACTGGAACTGAAACGCTAACTAATGAAGCTGGTGAAGTTACTAGTCATTTGCAAGGGATGTTTACGCGGACAATCAGACTTTTAGAAGCCGGGATGAAGCCAGTATATGTTTTTGATGGGAAGCCACCGGATTTGAAGAAACAAGAGCTGGCAAAACGTTACTCGAAGAGAGCTGAGGCTACTGAGGGCTTGTCAGAAGCCATAGAGGCTGACAATAAGGAAGATATTGAAAAGTATAGTAAACGGACAGTGAAGGTGACAAAGCAGCATAATGAAGACTGCAAAAGACTTTTAAGACTCATGGGAGTGCCTGTTGTTGAGGCACCCTCGGAAGCAGAGGCTCAGTGTGCTGCTCTCTGCAAAGCTGGAAAGGTTTATGCTGTGGCTTCTGAAGACATGGATTCTTTGACGTTTGGAGCTCCTAAATTTCTTCGCCATCTAATGGATCCTAGCTCGAAAAAAGTTCCAGTGATGGAATTTGATGTTGCAAAGATTTTGGAGGAGTTAAATCTGACCATGGACCAATTTATTGACTTATGCATTCTTTCTGGGTGTGATTATTGTGACAACATTCGAGGGATTGGGGGACAGACAGCTTTGAAGCTCATACGTCAACATGGCTCAATTGAAAATATTCTGGAGAACATAAACAGAGAGAGGTACCAGATACCAGATGATTGGCCATATCAGGAGGCTCGGAGGCTTTTTAAAGAACCAATGGTCATAACTGAAGATGAGGAACTTAATCTCAAGTGGTCTAGTCCAGATGAAGAAGGGTTAATGACATTTCTGGTAAATGAGAATGGGTTCAACAGTGATAGGGTGACAAAGGCAATAGAAAAAATTAAAGCGGCAAAGAACAAGTCATCACAAGGCCGATTGGAATCATTCTTTAAGCCAGCTGCAAATCCATCTGTACCTATCAAACGGAAGGAAAGCAAATGCATGCTTAGATCTTTCAAACCAGCAATTGAGCATAAGATGTTCTCTCTGCAACTTCCTAACGGGTCAAGGCCCATGGTTTTTGGCAAGTTGAGCTTGCCAATATATAATCTGGGTTCCAAGTTCTCTGTGCCATTGTCTAGAGGTGTCTGCTTTGGTGCCTGA 1251 0.4301 MGIKGLTKLLADNAPKAMKENKFESYFGRKIAVDASMSIYQFLIVVGRTGTETLTNEAGEVTSHLQGMFTRTIRLLEAGMKPVYVFDGKPPDLKKQELAKRYSKRAEATEGLSEAIEADNKEDIEKYSKRTVKVTKQHNEDCKRLLRLMGVPVVEAPSEAEAQCAALCKAGKVYAVASEDMDSLTFGAPKFLRHLMDPSSKKVPVMEFDVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGQTALKLIRQHGSIENILENINRERYQIPDDWPYQEARRLFKEPMVITEDEELNLKWSSPDEEGLMTFLVNENGFNSDRVTKAIEKIKAAKNKSSQGRLESFFKPAANPSVPIKRKESKCMLRSFKPAIEHKMFSLQLPNGSRPMVFGKLSLPIYNLGSKFSVPLSRGVCFGA. 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06549 416 Gene3D - 2 218 - -
Seca8g06549 416 Gene3D - 219 286 - -
Seca8g06549 416 SMART 53exo3 29 306 IPR002421 GO:0003677
Seca8g06549 416 CDD PIN_FEN1 4 332 - -
Seca8g06549 416 SMART HhH_4 221 254 IPR008918 GO:0003677|GO:0003824
Seca8g06549 416 Pfam XPG N-terminal domain 1 108 IPR006085 GO:0004518
Seca8g06549 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 224 239 IPR006084 -
Seca8g06549 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 28 42 IPR006084 -
Seca8g06549 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 146 163 IPR006084 -
Seca8g06549 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 82 101 IPR006084 -
Seca8g06549 416 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 167 187 IPR006084 -
Seca8g06549 416 CDD H3TH_FEN1-Euk 222 290 - -
Seca8g06549 416 Hamap Flap endonuclease 1 [fen]. 1 347 IPR023426 GO:0016788
Seca8g06549 416 SMART xpgn3 1 108 IPR006085 GO:0004518
Seca8g06549 416 SUPERFAMILY PIN domain-like 2 234 IPR029060 -
Seca8g06549 416 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 219 353 IPR036279 -
Seca8g06549 416 SMART xpgineu 147 219 IPR006086 GO:0004518
Seca8g06549 416 FunFam Flap endonuclease 1 219 286 - -
Seca8g06549 416 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 367 IPR006084 -
Seca8g06549 416 FunFam Flap endonuclease 1 10 222 - -
Seca8g06549 416 Pfam XPG I-region 150 234 IPR006086 GO:0004518
Seca8g06549 416 ProSitePatterns XPG protein signature 2. 150 164 IPR019974 GO:0016788
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06549 Seca-Chr8 160015388 160021617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06549 1 380 Core DNA Replication Machinery Family AT5G26680 85.526 0.0 685
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06549 K04799 - aew:130785282 707.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06549 8 160015388 160021617 Seca8g06549 8 160015388 160021617 ECH