Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06546 ATGGGAAGACACTCTTGCTGCTATAAGCAGAAGTTGAGAAAAGGCCTCTGGTCTCCAGAGGAAGATGAGAAGCTTTTGAATTACATCACCAAACATGGTCATGGATGTTGGAGCTCTGTCCCAAAACTAGCTGGCTTGCAGAGGTGTGGGAAGAGCTGCAGGTTAAGGTGGATAAATTACCTGAGACCTGATTTGAAGAGAGGAGCATTCTCTCAGCAAGAAGAGAATTTGATCATTGAACTCCATGCAGTCCTTGGTAACAGGTGGTCTCAGATTGCAGCACAGTTACCAGGAAGAACTGACAATGAGATTAAGAATCTATGGAATTCCTGTCTCAAGAAGAAACTGAGGCAAAGAGGCATTGACCCAAACACCCACAAACCACTCTCTGAGATTGAGAATGACATTAAGGAAAAGCCACCCATAGCTGACAAAAGCAATCAGAAAGCCTCAGTTGGATCCAATGAAGTGATGAGTTTGGTTGAGGCAGCAAACCCCAAACCAACTTCCATGCCTGCAGAGAGATACCCACTAGAAGTTTCTACTACCTCCAAGATCAACAACAGCAACAGCAGTAGCAGTAATTTGACCAGCACAACACCACCACCTACCCAGGAATTATTCCTAGATAGGTTTGGTACCTGCCATGACAGTTCCATTACCACCAGTTGCAGGCCATCTGATATGGCAGGATACTTTTCTTTCCAGCACTTGAACTATGGATCAAACATGGGACTCTCTCCAAATCCCAACACTTCTCTTTGTTTCCTACCAAACACTACTTCTTCTCAAGTTATGTCAGACCTCAATTCTACCATAACCTCTACCATGCTCCATTCTGTGTCAAGCTCAATTTTCCCAACTCCAACACATGTAAAGTCCACCATTAGTACTCTCCAGTCTAATAACAATCCTTCTTCCATATCCTCTGATGGGGTTCACAACTGGGAGGCCAATAACTTCAGTAACAAAAGCAATGGGAACAGTAACAATATCCAGTTACAAAACAACACAAACTTCTTTGACAACAGCACTCTAACATGGGGGCTGGCAGAGTCTGTGAAGGTTAATAATAAAGACTCTCATCATGTACCCTTACAAGCAGAACAAGAAGACATAAAATGGTCTGAGTATCTCAACACCCCATTTCTTCTGGGAAACACAGTGCAGAATCAAACCTCTCAATCCATCTACAGTGAGGTTAAACCAGAAACAAGCTTCATAACAGATGAGTCATGTACTAGTTGGCACCATAGCCAACAGCACCAACCAGCTTTTCAACTTTCAGATATATATACCAAGGATCTGCAGAGATTTTCAGTGGCTTTTGGACAAACCATGTAA 1344 0.4301 MGRHSCCYKQKLRKGLWSPEEDEKLLNYITKHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQQEENLIIELHAVLGNRWSQIAAQLPGRTDNEIKNLWNSCLKKKLRQRGIDPNTHKPLSEIENDIKEKPPIADKSNQKASVGSNEVMSLVEAANPKPTSMPAERYPLEVSTTSKINNSNSSSSNLTSTTPPPTQELFLDRFGTCHDSSITTSCRPSDMAGYFSFQHLNYGSNMGLSPNPNTSLCFLPNTTSSQVMSDLNSTITSTMLHSVSSSIFPTPTHVKSTISTLQSNNNPSSISSDGVHNWEANNFSNKSNGNSNNIQLQNNTNFFDNSTLTWGLAESVKVNNKDSHHVPLQAEQEDIKWSEYLNTPFLLGNTVQNQTSQSIYSEVKPETSFITDESCTSWHHSQQHQPAFQLSDIYTKDLQRFSVAFGQTM. 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06546 447 MobiDBLite consensus disorder prediction 184 204 - -
Seca8g06546 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca8g06546 447 Gene3D - 11 67 - -
Seca8g06546 447 Gene3D - 68 140 - -
Seca8g06546 447 SMART sant 66 114 IPR001005 -
Seca8g06546 447 SMART sant 13 63 IPR001005 -
Seca8g06546 447 MobiDBLite consensus disorder prediction 122 144 - -
Seca8g06546 447 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca8g06546 447 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca8g06546 447 CDD SANT 17 61 IPR001005 -
Seca8g06546 447 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Seca8g06546 447 FunFam MYB transcription factor 68 140 - -
Seca8g06546 447 SUPERFAMILY Homeodomain-like 12 108 IPR009057 -
Seca8g06546 447 MobiDBLite consensus disorder prediction 122 154 - -
Seca8g06546 447 CDD SANT 69 109 IPR001005 -
Seca8g06546 447 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca8g06546 447 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca8g06546 447 FunFam Myb transcription factor 11 67 - -
Seca8g06546 447 PANTHER MYB DOMAIN PROTEIN 55 1 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06546 Seca-Chr8 159966598 159968568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06546 1 447 MYB Transcription Factor Family AT1G09540 48.552 5.97e-121 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca8g06546 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06546 K09422 - qsu:112017656 587.8