Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06544 ATGCCTCTGTACGAGTTATACCGGTTAGCTAGAGAGAAGCTTGGAAAAGAGACTAACAACACACATGCAGCTGATCAACCTTCCTCGCCTGAGAATGATTTTTTGGAGCTGGTTTGGGAGGGTGGTCAGATTTCAAGCCAGGGTCAGTCGAGTAGAGTTAGAAAGAGTCCATCTTGCAGGAGTTTGCCATCTCACTGCTTACCATCTCACAGTCCTAAAGGTAGAGATAAAGATGTAGGATATGGTAACAATACAAAGATGGGGAAGTTTGGGGATTTAGATTCTGGATTGAATGAGATTCCAATGTCAGTGCCATCCCGTGAAGTGGATTTGAGTCAAGATGAAGATGTGATACCTTGGTTGGATTATACAATGGATGGCTCTTTGCATCATGAATATAGTTCTGATTTCCTACATGAACTATCCGGGGTCACAGAGAATGACCTCCCTGTCTCAAATAGTTTTACTCTATTGGATAAAAGAAGTAATGACAACCAGGTATTTAGGGAGTCTCATAAAAATTCTGCAGAACCAGGGAATGTTTCCAAGGGTTCCTTAGCTGAACAAGTTGAGACTGCTAGACCTAAAGCTAGCACCAGTCAGTTATACCTACCATCATCACATCAATGTCAAGCATCATATGTATCTGCTAGATCCAGGACATCAGATATAACTGAAAATAATAATACAAGTAATGTAAACCAGGATGTACCTTATGGTGAAATTACTCAGATTCCATCTTCTTCAAGTGATTTTTCTAGCTTAAAGGTGCAGAAGCAGGATCCTGTGATGCCTAGCAATGGTTCTGCTGTGATGAATTTCTCCCATTTTGCAAGGCCTGCTGCTCTTGTGAGGGCTAATCTTCAGAACATTGGCTTGAAGTCTGGTTTGTCTTCAGCAAGATCAGACAATATGGGAATTAAGAATAAAGGTGTTGCTTCAACTAGCAGCAATCCTCCTGAGTCAACTCTTATTGATTCAAGTGGTGAATGTCCAAAGGAACCAACCAAGCACTGCCAGCAGGTTGCAGAGCAATCCAAGGCTGATTTGAAACCTTTGCAGCCAAAATCTCTTGAACAGAATGCTAAAGCTTCTAAACAGTTGGAGCCTGCTTGCGAAGAGAGTGCTATTAAGATTGATCAGACTTCTAATCTAGCTCTTGGTGACAGTAGAGCTAAAGGACACACAGCTGCTGAAAAAAATACTGAGCCAGCAGTAGCCTCTTCCTCTGTTTGCTCTGGCAATGGTGCAGACAGAGGTTCAGATGATCCTAATCAAAATTTGAAGCGAAAAAGTAGAGACACTGAGGACTCTGAGTGCCACAGTGAAGATGTTGAGGAAGAATCAGTTGGTGTTAAAAAGGCAGGTGCTGGACGAGGTACAGGTTCCAAGAGAAGCCGTGCAGCTGAAGTGCATAATTTATCTGAAAGAAGGCGAAGAGACAGGATCAATGAGAAGATGCGTGCATTGCAAGAACTCATACCGAATTGCAATAAGGTGGATAAAGCTTCTATGCTGGATGAGGCAATTGAGTATCTTAAAACACTTCAGCTCCAAGTTCAAATTATGTCAATGGGAGCTGGTTTATATATGCCTCCAATGATGTTACCTGCAGGAATGCAGCACATGCATGCAGCACACATGGCTCCATTTTCACCTATGGGTGTTGGCATGCACATGGGGTTGGGTATGGGTTATGGGATGGGAATGCCTGACATGAGTGGTGGATCTTCTAGATTCCCCACAATGATTCAGGTGCCCCAAATGCAAGGAACTCATATCCCTGTTGCACATATGTCTGGTCCTACTGCTTTACATGGGGTGGCCAGACCAGGTCCTGGAGGGTTTGGGCTTCCTGGTCAGGGACTTCCCATGCCAATGCCACGTGCTCCTGTATTTCCTTTTTCAGGAGGGCCTCTCATGAACTCATCACCTCTGGGACTACATGCCTCTGGATCAGCAGGACCTGTTGAAACTGTGGATTCAGCTTCAGCATCTGGCTTAAAGGATCCAATGCCAAATATGGACTCACAAGTTAAGCAAAACACTGGTGGATGTGACTCCACAAGTCAGATGCCTACCCAGTGTGAAGCAGCAACTGTTGGATTTGAACAGTCAGCAATGGTGCATAATAGTGGTCATGCTTCTGTGGCTAATGACAGTGGAGCTGTTAATCCTGGAAAAGAAGACAACCTTGTGATTGGTTATGATTGA 2214 0.4399 MPLYELYRLAREKLGKETNNTHAADQPSSPENDFLELVWEGGQISSQGQSSRVRKSPSCRSLPSHCLPSHSPKGRDKDVGYGNNTKMGKFGDLDSGLNEIPMSVPSREVDLSQDEDVIPWLDYTMDGSLHHEYSSDFLHELSGVTENDLPVSNSFTLLDKRSNDNQVFRESHKNSAEPGNVSKGSLAEQVETARPKASTSQLYLPSSHQCQASYVSARSRTSDITENNNTSNVNQDVPYGEITQIPSSSSDFSSLKVQKQDPVMPSNGSAVMNFSHFARPAALVRANLQNIGLKSGLSSARSDNMGIKNKGVASTSSNPPESTLIDSSGECPKEPTKHCQQVAEQSKADLKPLQPKSLEQNAKASKQLEPACEESAIKIDQTSNLALGDSRAKGHTAAEKNTEPAVASSSVCSGNGADRGSDDPNQNLKRKSRDTEDSECHSEDVEEESVGVKKAGAGRGTGSKRSRAAEVHNLSERRRRDRINEKMRALQELIPNCNKVDKASMLDEAIEYLKTLQLQVQIMSMGAGLYMPPMMLPAGMQHMHAAHMAPFSPMGVGMHMGLGMGYGMGMPDMSGGSSRFPTMIQVPQMQGTHIPVAHMSGPTALHGVARPGPGGFGLPGQGLPMPMPRAPVFPFSGGPLMNSSPLGLHASGSAGPVETVDSASASGLKDPMPNMDSQVKQNTGGCDSTSQMPTQCEAATVGFEQSAMVHNSGHASVANDSGAVNPGKEDNLVIGYD. 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06544 737 SMART finulus 473 522 IPR011598 GO:0046983
Seca8g06544 737 MobiDBLite consensus disorder prediction 44 94 - -
Seca8g06544 737 MobiDBLite consensus disorder prediction 651 691 - -
Seca8g06544 737 CDD bHLH_AtPIF_like 467 529 IPR047265 -
Seca8g06544 737 MobiDBLite consensus disorder prediction 465 480 - -
Seca8g06544 737 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 464 527 IPR036638 GO:0046983
Seca8g06544 737 MobiDBLite consensus disorder prediction 296 369 - -
Seca8g06544 737 PANTHER TRANSCRIPTION FACTOR PIF3 1 692 IPR044273 GO:0003700|GO:0006355
Seca8g06544 737 MobiDBLite consensus disorder prediction 402 422 - -
Seca8g06544 737 FunFam Basic helix-loop-helix transcription factor 462 525 - -
Seca8g06544 737 MobiDBLite consensus disorder prediction 423 453 - -
Seca8g06544 737 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 467 516 IPR011598 GO:0046983
Seca8g06544 737 MobiDBLite consensus disorder prediction 675 691 - -
Seca8g06544 737 MobiDBLite consensus disorder prediction 390 480 - -
Seca8g06544 737 MobiDBLite consensus disorder prediction 296 325 - -
Seca8g06544 737 Pfam Helix-loop-helix DNA-binding domain 471 517 IPR011598 GO:0046983
Seca8g06544 737 MobiDBLite consensus disorder prediction 44 65 - -
Seca8g06544 737 Gene3D - 462 525 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06544 Seca-Chr8 159937530 159943021 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06544 1 616 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G09530 37.739 5.32e-86 279
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca8g06544 HLH 8.1e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06544 K12126 - gmx:100794974 1096.65