Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06528 ATGGGTGCTGATCTTAAAGCTGATTTGTCCAAGAAAACTCCCATTGCTGGTCTTAAGGTTTGGGAAATAATTGGAATTGCAGTTGGATTGTCTATTATTGTTATCCTCTCTGTGCTCTCATTTTGCCTTACTTCACGCAAGAAATCTAGAAAGGCTAGAGACAAGGTTCCTGTTAGTCAAATACCTACTGTCTCAAAGGAAATCAAAGAAGTAAGGGTTGAGCAAGTACCAGCAAATGGATTTGTTCCCCGTGATGGAATACTTCTTACAATTCATGATAAATCCAGTGATAGAGAATCAGACAAAGTTATGGTTCATTTAGGTGTGGGGAATATGAAGCATGGGGATAGTGGAAGTCACTCAGATTCATTTCATGGAGGTGGGTCACAATCAGGGGAAGAAGGTAGCTCTGGCACGATTAAAGTGTACAAGCCCTCTTCTTCATACCATATAACAGCTCCTTCACCTCTGTCTGGCCTTCCAGAGTTCTCTCACTTGGGTTGGGGTCACTGGTTTACATTGAGGGATCTTGAACTTGCTACTAATCGTTTTTCAAAAGAAAATGTCCTTGGTGAGGGTGGTTATGGAGTTGTTTACCGGGGAAAGTTGATCAATGGGACTCCAGTGGCAGTTAAAAAGATACTCAACAACATTGGCCAAGCTGAGAAAGAATTTAGAGTGGAAGTCGAAGCTATTGGCCATGTCCGACATAAAAATTTGGTTCGTCTATTGGGGTACTGCATTGAGGGGACTCACAGGTACCCTACCTATCAATTACGTTACAGTCTCAACGTATACAATCTCAATAATCTGCAAAGAAGAAATGAATTATTTTTGCCAGAGATGTTAGTGTATGAGTATGTCAATAATGGAAACTTAGAGCAATGGCTTCATGGAGCTATGCGTCATCATGGGTATCTTACTTGGGAAGCACGTATCAAGATTCTTCTTGGCACAGCTAAGGCGCTTGCATATTTGCATGAAGCGATTGAGCCGAAGGTGGTTCACCGAGATATCAAGTCAAGCAACATATTAATTGATGACGACTTCAATGCCAAGGTTTCTGATTTTGGCCTGGCCAAGTTACTAGGTTCTGGGACAAGTCATGTTGCAACACGAGTTATGGGAACCTTTGGATATGTGGCTCCTGAATATGCAAATACTGGTCTTTTAAATGAAAAGAGTGATGTTTATAGCTTTGGTGTTGTGCTATTGGAAGCAATTACTGGAAGAGACCCAGTTGACTATGGTCGCCCAGCACAGGAAGTTAATCTGGTTGATTGGTTGAAGATGATGGTTGGAAACAGACGATCAGAAGAAGTGGTGGACCCAAACATTGAGGTGAAGCCATCAACCAGAGCTTTAAAAAGGACTCTCTTAACTGCTTTAAGATGTGTAGATCCAGATTCGGAGAAAAGACCTAAGATGGGCCAAGTTGCACGTATGCTTGAGTCAGAGGAGTACCCTTTACAGAGAGAGGACCGAAGGCAGCGGAGAAATCGCGGGGTTAACTCAGAAATTGAATCCCAGAATTCTGACACAGACCGGAGTGAGATTCAAGGTTTTAGATCAGAAGGCGAAAGGTAA 1587 0.4241 MGADLKADLSKKTPIAGLKVWEIIGIAVGLSIIVILSVLSFCLTSRKKSRKARDKVPVSQIPTVSKEIKEVRVEQVPANGFVPRDGILLTIHDKSSDRESDKVMVHLGVGNMKHGDSGSHSDSFHGGGSQSGEEGSSGTIKVYKPSSSYHITAPSPLSGLPEFSHLGWGHWFTLRDLELATNRFSKENVLGEGGYGVVYRGKLINGTPVAVKKILNNIGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGTHRYPTYQLRYSLNVYNLNNLQRRNELFLPEMLVYEYVNNGNLEQWLHGAMRHHGYLTWEARIKILLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDDFNAKVSDFGLAKLLGSGTSHVATRVMGTFGYVAPEYANTGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPAQEVNLVDWLKMMVGNRRSEEVVDPNIEVKPSTRALKRTLLTALRCVDPDSEKRPKMGQVARMLESEEYPLQREDRRQRRNRGVNSEIESQNSDTDRSEIQGFRSEGER. 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06528 528 CDD STKc_IRAK 190 484 - -
Seca8g06528 528 SMART serkin_6 184 483 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06528 528 MobiDBLite consensus disorder prediction 122 139 - -
Seca8g06528 528 FunFam Putative receptor-like protein kinase 166 259 - -
Seca8g06528 528 SUPERFAMILY Protein kinase-like (PK-like) 168 491 IPR011009 -
Seca8g06528 528 MobiDBLite consensus disorder prediction 482 528 - -
Seca8g06528 528 MobiDBLite consensus disorder prediction 482 503 - -
Seca8g06528 528 Pfam Protein kinase domain 185 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06528 528 ProSitePatterns Serine/Threonine protein kinases active-site signature. 334 346 IPR008271 GO:0004672|GO:0006468
Seca8g06528 528 PANTHER OS01G0323000 PROTEIN 5 511 - -
Seca8g06528 528 FunFam Putative receptor-like serine/threonine-protein kinase 288 499 - -
Seca8g06528 528 MobiDBLite consensus disorder prediction 116 139 - -
Seca8g06528 528 Gene3D Phosphorylase Kinase; domain 1 165 258 - -
Seca8g06528 528 Gene3D Transferase(Phosphotransferase) domain 1 288 501 - -
Seca8g06528 528 ProSiteProfiles Protein kinase domain profile. 184 476 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06528 528 ProSitePatterns Protein kinases ATP-binding region signature. 190 213 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06528 Seca-Chr8 159745145 159751076 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06528 161 486 Trihelix Transcription Factor Family AT1G70460 46.828 9.68e-87 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Seca8g06528 Pkinase 9.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06528 - - gmx:100778269 834.328