Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06522 ATGGCTTCGGTTGGTGTGGCACCAACTTCAGGTATGAGAGAAGCCAGTGGTCATGCTGCAGCAGGTGTTGATAGATTGCCAGAGGAGATGAACGATATGAAAATTAGGGATGATAGAGAAATAGAGGCCACAGTTGTTGATGGCAATGGAACGGAGACTGGACATATCATTGTGACTACCATTGGGGGTAGAAATGGTCAGCCAAAGCAGACTATAAGCTATATGGCAGAGCGTGTTGTAGGGCATGGTTCATTTGGAGTTGTCTTCCAGGCTAAATGCTTGGAAAATGGTGAAACTGTGGCTATCAAGAAGGTTCTTCAAGACAAGAGGTATAAGAACAGGGAGCTACAAACGATGCGCCTTCTTTACCACCCGAATGTTGTCTCTTTGAAGCATTGTTTCTTTTCAACTACTGAAAAGGATGAACTATACCTTAATTTGGTACTGGAGTATGTTCCTGAAACAGTTCATCGTGTGATCAAACATTACAACAAGTTGAACCAAAGGTTGCCGCTGATTTATGTGAAGCTCTATACATACCAGATCTTTAGGGCATTATCTTATATTCACCGTTGTATTGGAGTCTGCCATCGGGATATCAAGCCTCAAAATCTATTGGTCAATCCACACACTCACCAGGTTAAATTATGTGACTTTGGAAGTGCAAAAGTCTTGGTAAAAGGCGAACCAAATATATCGTATATATGTTCTAGATATTATAGAGCACCTGAGCTTATATTTGGAGCAACTGAATATACTACTGCTATTGACGTCTGGTCTGTTGGTTGTGTTTTAGCTGAACTGCTCCTTGGACAGCCTTTGTTCCCGGGTGAGAGTGGAGTTGATCAGCTTGTTGAGATCATCAAGGTTTTGGGCACTCCAACAAGGGAAGAGATTAAATGCATGAATCCTAATTATACAGAATTTAAGTTCCCACAGATTAAAGCACATCCATGGCACAAGATCTTCCATAAGCGCATGCCTCCAGAGGCTGTTGATTTGGTATCAAGATTACTACAGTACTCTCCTAACCTGCGGTGCTCAGCTGTGAGTATATGA 1059 0.4212 MASVGVAPTSGMREASGHAAAGVDRLPEEMNDMKIRDDREIEATVVDGNGTETGHIIVTTIGGRNGQPKQTISYMAERVVGHGSFGVVFQAKCLENGETVAIKKVLQDKRYKNRELQTMRLLYHPNVVSLKHCFFSTTEKDELYLNLVLEYVPETVHRVIKHYNKLNQRLPLIYVKLYTYQIFRALSYIHRCIGVCHRDIKPQNLLVNPHTHQVKLCDFGSAKVLVKGEPNISYICSRYYRAPELIFGATEYTTAIDVWSVGCVLAELLLGQPLFPGESGVDQLVEIIKVLGTPTREEIKCMNPNYTEFKFPQIKAHPWHKIFHKRMPPEAVDLVSRLLQYSPNLRCSAVSI. 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06522 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 195 207 IPR008271 GO:0004672|GO:0006468
Seca8g06522 352 SMART serkin_6 74 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06522 352 ProSitePatterns Protein kinases ATP-binding region signature. 80 104 IPR017441 GO:0005524
Seca8g06522 352 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 40 350 - -
Seca8g06522 352 CDD STKc_GSK3 69 350 IPR039192 -
Seca8g06522 352 Gene3D Transferase(Phosphotransferase) domain 1 154 352 - -
Seca8g06522 352 FunFam Glycogen synthase kinase-3 beta 58 153 - -
Seca8g06522 352 ProSiteProfiles Protein kinase domain profile. 74 352 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06522 352 MobiDBLite consensus disorder prediction 1 29 - -
Seca8g06522 352 FunFam Shaggy-related protein kinase kappa 154 352 - -
Seca8g06522 352 Pfam Protein kinase domain 74 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca8g06522 352 SUPERFAMILY Protein kinase-like (PK-like) 73 351 IPR011009 -
Seca8g06522 352 Gene3D Phosphorylase Kinase; domain 1 58 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06522 Seca-Chr8 159672821 159676510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06522 74 349 MAP Kinase Gene Family AT1G73670 38.832 3.17e-52 180
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca8g06522 Pkinase 3.5e-61 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06522 K00924 - gmx:100780226 698.353