Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06521 ATGCCAGTAAAGAAGTTTTACTGCGATTATTGCGATAGGCAATTCCCGGACACACCAGCGGATCGGAAGCGACACAATCGTGGCATTCAGCACCAACAAGCCAAAGCTCGTTGGTACGATTCCTTCAAATTCGAACAACAACAACCTCATCATCTTCCTATTCCATCCCCTAAACCCCTCTGTTTTCACTTCGTCAACACGGGATTTTGCCGTTACGGCGACTCCTGCAAATATATGCATCCCAATCCCAACAATATACCGCAGCCACAAGTTGCAGGGAATGTGATAGTAGGAGATAGAGATAGCATGGGAACGGGAATGGGAGTTTCATGGGACAATTTACCCCCATCGCTACAGCCTCCGCCTGAGGGTGGATATCCCCAACTTCCCTTTGTTGATTGGGGTTCTGGGAGTGGATCTGTCAAAAGTCAAAAGGTAACTGACTGGTAA 450 0.4778 MPVKKFYCDYCDRQFPDTPADRKRHNRGIQHQQAKARWYDSFKFEQQQPHHLPIPSPKPLCFHFVNTGFCRYGDSCKYMHPNPNNIPQPQVAGNVIVGDRDSMGTGMGVSWDNLPPSLQPPPEGGYPQLPFVDWGSGSGSVKSQKVTDW. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06521 149 PANTHER NUCLEASE-RELATED 1 135 - -
Seca8g06521 149 SMART ZnF_U1_5 3 38 IPR003604 GO:0003676|GO:0008270
Seca8g06521 149 ProSiteProfiles Zinc finger C3H1-type profile. 55 83 IPR000571 GO:0046872
Seca8g06521 149 Pfam U1 zinc finger 4 39 IPR013085 GO:0008270
Seca8g06521 149 Gene3D Classic Zinc Finger 3 46 - -
Seca8g06521 149 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 59 81 IPR000571 GO:0046872
Seca8g06521 149 SMART c3hfinal6 56 82 IPR000571 GO:0046872
Seca8g06521 149 SUPERFAMILY beta-beta-alpha zinc fingers 4 48 IPR036236 -
Seca8g06521 149 SUPERFAMILY CCCH zinc finger 59 83 IPR036855 GO:0046872
Seca8g06521 149 Gene3D - 47 104 - -
Seca8g06521 149 MobiDBLite consensus disorder prediction 112 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06521 Seca-Chr8 159669735 159671911 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca8g06521 zf-U1 1e-09 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06521 K13152 - gmx:100527203 184.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06521 8 159669735 159671911 Seca8g06521 8 159669735 159671911 ECH