Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06516 ATGTTCTCTCCAATCCCCAATAAGACAGAGCAGCGGAGAAGAAGCTTTGGAGAGAGAATGACAAATAGTGTCATTCCATTCGTAGTCATGGTTATAGTGCAATTGAGCTATGCAGGAATGAATATTACCTCAAAGCTTGCAATACAATCTGGGATGCACCCTCTTGTCCTTGTTGCTTATCGCCAAATCTTTGCGACTCTCTCCATTGCTCCCTTCGCTTATTGGTTTGAACGGAATACGGTTCCCCGGCTGACAATGCGCATTGGGTTCCAGATATTAATATCTTCCTTAACAGGGGTTACAGGCAATCAGGTGTTATATTTCGTGGGGCTAAAATATTCAACCGCTACAATTGCATGTGCACTAACCAATTTGCTCCCAGCTTTCACTATTGTCCTTGCAGTCCTCTTCAGACAAGAGTATTTGAGAATGAAGACGAAGTCCGGGATAGCGAAGGTGTTAGGGACAGTCCTGAGTGTGGGTGGAGCCCTGCTTTTATCATTTTACCATGGAAAGGCCCTTAATCTAGGTGAGTCAATAATTCACTGGGGATATGCAGACAGAACGGAAAGCACAACCTCCTCCTCCAGTAGTGAAAAAAACTTGCTTCTAGGCCCTATTGCCGTAATTGTTAGTTCTCTTGTTTGGGCAATATGGTTCATAATTCAAGCTGACATGAGCAAGAGTTTTCCAGCTCCTTATACGAGTAGCCTCTACATGTGTTTATTAGGAAGCATTCAGTGTGTGGCCATTGCCTTGTGTTTTGAACACAATGTCTCAGCTTGGTCACTCGATAATACTATGAGACTTACTTCTGCACTTTATGCGGGGATTATTTCCACGGGGCTAACGTATGTTCTCCTTTCATGGACCATTGATAGGAAAGGTCCTCTCTATGTTTCTGTATTCTCTCCTTTGCTGCTTGTCATCACCGCCGTTGTCAGCTGGGCTCTGCTTCATGAGAAATTATATGTTGGCACTGTCATAGGGTCTGTCCTGATAATTTTCGGGCTCTATTCTGTTTTGTGGGGAAAGAGCAAAGAGATGGATCAGAAAGAGGGAAATCAAGGGATGGTCACAGAAACAATCAAGGATGAGATGAATGATATGGAATTGCAAACCTATAATCCTTCTAATCGTGCAGAAGAGATGGGGTTGTCTTTCACCAAACTTTTTAGCCGGCTCTTTGCCAAAAAAGAGATGCGTATTCTAATGGTAGGTCTTGACGCTGCTGGTAAGACTACCATCTTGTACAAGCTCAAGCTGGGAGAAATTGTGACAACCATTCCCACAATTGGATTTAATGTGGAGACTGTGGAATATAAGAATATTAGCTTTACTGTATGGGATGTGGGTGGCCAAGATAAGATACGCCCTTTATGGAGACACTACTTCCAGAACACACAAGGGCTTATCTTTGTCGTCGATAGCAATGATCCTGACCGTGTTGTTGAGGCTAGAGATGAGCTCCACCGAATGTTGAATGAGGATGAGTTGAGAGATGCTGTACTCCTCGTATTTGCCAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCAGAAATCACAGACAAGCTTGGTCTTCATTCTCTTCGTCAACGTCACTGGTATTCAGATACATTTCTGGTACATTCAGAGCACATGTGCCACCTCTGGGGAAGGACTCTATGA 1671 0.4363 MFSPIPNKTEQRRRSFGERMTNSVIPFVVMVIVQLSYAGMNITSKLAIQSGMHPLVLVAYRQIFATLSIAPFAYWFERNTVPRLTMRIGFQILISSLTGVTGNQVLYFVGLKYSTATIACALTNLLPAFTIVLAVLFRQEYLRMKTKSGIAKVLGTVLSVGGALLLSFYHGKALNLGESIIHWGYADRTESTTSSSSSEKNLLLGPIAVIVSSLVWAIWFIIQADMSKSFPAPYTSSLYMCLLGSIQCVAIALCFEHNVSAWSLDNTMRLTSALYAGIISTGLTYVLLSWTIDRKGPLYVSVFSPLLLVITAVVSWALLHEKLYVGTVIGSVLIIFGLYSVLWGKSKEMDQKEGNQGMVTETIKDEMNDMELQTYNPSNRAEEMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDPDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYSDTFLVHSEHMCHLWGRTL. 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06516 556 SMART arf_sub_2 384 556 - -
Seca8g06516 556 SMART sar_sub_1 384 548 IPR006689 GO:0003924|GO:0005525
Seca8g06516 556 Pfam ADP-ribosylation factor family 388 537 IPR006689 GO:0003924|GO:0005525
Seca8g06516 556 Gene3D - 383 548 IPR027417 -
Seca8g06516 556 Pfam EamA-like transporter family 28 167 IPR000620 GO:0016020
Seca8g06516 556 Pfam EamA-like transporter family 204 342 IPR000620 GO:0016020
Seca8g06516 556 SUPERFAMILY Multidrug resistance efflux transporter EmrE 241 347 - -
Seca8g06516 556 PANTHER WAT1-RELATED PROTEIN 26 353 IPR030184 GO:0016020|GO:0022857
Seca8g06516 556 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 397 537 IPR027417 -
Seca8g06516 556 NCBIfam small GTP-binding protein domain 399 521 IPR005225 GO:0005525
Seca8g06516 556 ProSiteProfiles small GTPase Arf family profile. 394 556 - -
Seca8g06516 556 FunFam ADP-ribosylation factor 1 385 550 - -
Seca8g06516 556 SMART rab_sub_5 401 551 - -
Seca8g06516 556 SUPERFAMILY Multidrug resistance efflux transporter EmrE 60 168 - -
Seca8g06516 556 CDD Arf1_5_like 401 537 IPR045872 GO:0003924
Seca8g06516 556 PRINTS GTP-binding SAR1 protein signature 402 425 IPR006689 GO:0003924|GO:0005525
Seca8g06516 556 PRINTS GTP-binding SAR1 protein signature 457 482 IPR006689 GO:0003924|GO:0005525
Seca8g06516 556 PRINTS GTP-binding SAR1 protein signature 430 454 IPR006689 GO:0003924|GO:0005525
Seca8g06516 556 PRINTS GTP-binding SAR1 protein signature 502 523 IPR006689 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06516 Seca-Chr8 159604073 159615101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06516 22 345 Nodulin-like Gene Family AT1G09380 58.333 2.88e-138 404
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06516 - - gmx:100802059 534.643