Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06508 ATGGCTCGGAAACCCAAATCCGCCTCTTCCTCCTCCTCCTCCTCCGCTGCCGCCTCAACCTACTTCAAAGCCGGCGCTGCGGTGGAAATCAGCTCCGAAGACGAAGGCTTCCGCGGCTCTTGGTTCACCGGCAGGATCGTCCGCCGAATCGCTGCTGGCAGATTCATGGTCGAGTACGATAACCTGATGGAGGACGAGGAAGGCACCAAGCGCTTGAGGGAATCCCTGAATCTTCACCAGCTCCGACCAATTCCCCCGCAAGATACCAACCGGGAATTCAAGTTCGGCGAAGAGGTGGACGCGTTCCACAACGACGGCTGGTGGGAGGGCCACATAGCCGAAGAATTGGGGAATGGCAGGTACGCGGTGTTTTTCAGAGTCTCCAAGGAGCAGATCAATTTTTCGAAGGAGGAGCTCAGGGTCCACCGCGAGTGGTTGAATGACGAATGGATCCCCCCAATTGAACAACAACAACAACAAGAACAAGAAGAGAATGAATTGAAGGAAACGTTGTTGACACCAAATGTGAAGCCTGTTGAAACTGGGGCGGAAAAGCAGGAGGAGTTTAGCGTGGGGGCACTGGTTGAGGTTAGCAGTGACGACGATGGTTTCCGAGGAGCTTGGTTTTCTGCCACCATTGTTGAGGCAAGGGGAAAGGAGAAGTTCCTTGTTGAGTACCAGAGCCTTCTGGCTGATGATGACTCTTCTCTTTTAAAAGAGGAGGTTGATATCCTGCACATGAGGCCTCAACCGCCAGAGAAGGGTGCTGTTGGTCAGTTTAATCTTCTTGATGAAGTTGATGCTTCGTACAATGACGGCTGGTGGGTTGGTGTGATTTCTAAAGTTATTGGCAGCTCGAGGTATATAGTTTTTTTCAGGAACAGCAATGAAGAGCTAGAGTTTGAGCACTCCCAGTTGAGGCTACACCAGGACTGGATTGATGGCAAATGGGTCATGGCTTCTGAGGTATGGCTGCATCCTTATTTATTTTTCAACCTTACACATTGGAACTTCATTTTGAAACTAGTCTTGATTCACATAAAAAAATGTGGTAATCTGTTGCTATAA 1068 0.4981 MARKPKSASSSSSSSAAASTYFKAGAAVEISSEDEGFRGSWFTGRIVRRIAAGRFMVEYDNLMEDEEGTKRLRESLNLHQLRPIPPQDTNREFKFGEEVDAFHNDGWWEGHIAEELGNGRYAVFFRVSKEQINFSKEELRVHREWLNDEWIPPIEQQQQQEQEENELKETLLTPNVKPVETGAEKQEEFSVGALVEVSSDDDGFRGAWFSATIVEARGKEKFLVEYQSLLADDDSSLLKEEVDILHMRPQPPEKGAVGQFNLLDEVDASYNDGWWVGVISKVIGSSRYIVFFRNSNEELEFEHSQLRLHQDWIDGKWVMASEVWLHPYLFFNLTHWNFILKLVLIHIKKCGNLLL. 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06508 355 CDD Tudor_Agenet_AtDUF_rpt2_4 262 308 - -
Seca8g06508 355 CDD Tudor_Agenet_AtDUF_rpt2_4 96 141 - -
Seca8g06508 355 CDD Tudor_Agenet_AtDUF_rpt1_3 22 86 - -
Seca8g06508 355 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 184 321 - -
Seca8g06508 355 CDD Tudor_Agenet_AtDUF_rpt1_3 189 252 - -
Seca8g06508 355 Gene3D - 176 260 - -
Seca8g06508 355 SMART agenet_At_2 258 314 IPR014002 -
Seca8g06508 355 SMART agenet_At_2 20 89 IPR014002 -
Seca8g06508 355 SMART agenet_At_2 187 255 IPR014002 -
Seca8g06508 355 SMART agenet_At_2 91 147 IPR014002 -
Seca8g06508 355 Pfam Agenet domain 25 86 IPR008395 -
Seca8g06508 355 Pfam Agenet domain 192 252 IPR008395 -
Seca8g06508 355 Pfam Agenet domain 264 318 IPR008395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06508 Seca-Chr8 159519472 159520703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06508 199 324 PHD Transcription Factor Family AT5G58610 30.612 1.92e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06508 - - aprc:113871596 444.121
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06508 8 159519472 159520703 Seca8g06508 8 159519472 159520703 ECH