Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06504 ATGTCCGACGACAAAGGCACAGACCAATACGGTGTTCTCCTCTATTACAAGTACGCTGAGATTCCGAACCTCGACGACCTCTTCACATTCTACCACTCCAACTGCTCCTCCCTCGGCCTCCTTGGTCGTGTTCGCCTTTCTTCTCACGGCGTCAATGTCACCGTTGGCGGCAACTTATCCTCTCTGGAGAGACACATTGAAGCCGTGAAGGCAAACAATAGCTTATTTGAAGGCACTGATTTCAAGCTTGCAACTTGTCATCAGCCACTGAATGACCAGGTTGCCAAGGAGTGTGGATTCACTTCTCTCTCAATTCGGATCGTCGAGGAACTGGTTACTCTCAGTTCTCATCCACTATTAAAGTCACCAAAAATCTCAAATGCTGGAAGACATCTTTCTGCACTGGAGTTCCATTCTTCCATTCAGCATGCTAACAAGGAGAGTCCAGAAAACAGCCTGGTTTTACTTGATGCAAGGAATCTGTATGAAACAAGAATTGGGAAATTTCAGGCACCAAATGTTGAAACTTTGGATCCACAAGTCAGGCAGTATAGTGATTTTTCCTCATGGATAGATGATAATGGTGAACAGTTGAAAGGCAAAAATATCCTCATGTATTGTACTGGTGGAATCAGGTGTGAAATGGCATCGGCCTATATTAGGTCAAAAGGTGCTGGGTTTGAGAATGTGTTTCAGTTATTTGGTGGTATACAACGGTATTTGGAGCAATTCCCAGATGGTGGTTTTTTCAAAGGAAAGAATTTTGTTTTTGATCACCGGATATCAGTTGGAAGCTCAGATGCTAATATTATTGGTACCTGCCTTATTTGTCACTGCTCATTTGATGATTACTCTTCACGCTGCCGATGTACTTGTTGCAGAATGCTTGTCTTGGTTTGTCATAGTTGTCAGGTATGA 918 0.4336 MSDDKGTDQYGVLLYYKYAEIPNLDDLFTFYHSNCSSLGLLGRVRLSSHGVNVTVGGNLSSLERHIEAVKANNSLFEGTDFKLATCHQPLNDQVAKECGFTSLSIRIVEELVTLSSHPLLKSPKISNAGRHLSALEFHSSIQHANKESPENSLVLLDARNLYETRIGKFQAPNVETLDPQVRQYSDFSSWIDDNGEQLKGKNILMYCTGGIRCEMASAYIRSKGAGFENVFQLFGGIQRYLEQFPDGGFFKGKNFVFDHRISVGSSDANIIGTCLICHCSFDDYSSRCRCTCCRMLVLVCHSCQV. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06504 305 SMART rhod_4 139 246 IPR001763 -
Seca8g06504 305 FunFam Rhodanese-like domain-containing protein 6 1 112 - -
Seca8g06504 305 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 126 263 IPR036873 -
Seca8g06504 305 ProSiteProfiles Rhodanese domain profile. 149 249 IPR001763 -
Seca8g06504 305 Gene3D - 121 276 IPR036873 -
Seca8g06504 305 FunFam Thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 119 277 - -
Seca8g06504 305 Gene3D - 2 112 - -
Seca8g06504 305 Pfam Rhodanase C-terminal 251 304 IPR022111 -
Seca8g06504 305 Pfam UPF0176 acylphosphatase like domain 11 110 IPR040503 -
Seca8g06504 305 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 4 304 IPR020936 -
Seca8g06504 305 CDD RHOD_YceA 129 242 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06504 Seca-Chr8 159478026 159483392 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06504 8 305 Sulfurtransferasese or Rhodanese AT1G09280 75.168 6.34e-168 477
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06504 - - mtr:25484701 565.459
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06504 8 159478026 159483392 Seca8g06504 8 159478026 159483392 ECH