Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06499 ATGTTAGAGCCTCAAATTAACATGCAAGGCCAAGAGGATAAGAAGAAGACGATGCTTCCATCACCATCACACACTAAAGTTAGGGGCTTTCAAAGCCTTGTTGAACCTGCCACCAATGCAACTGCTTCTTCTTCCACTGCTGCCGGAAAGCTCTATTCTCCCCATCACTCTGACTCGGACACTTTCTACTCCAAACTCACTGAGTTATTGGACTCCTCTGGACTCAGTCTAATTTTCAATGTCCAAGAAACATTGTTGGACCTGCACCTGTTTTACTTGGAGGTGACCAGAAGAGGAGGATATCACCAGGTTGGCCGAGAAAAGAAATGGGGTGAAGTGGTCTCTGCCCTAAAATTGGAAGGCAATAATACAAAATTATCTGCTCAAGTTGAAAAGCTCTATGCACACCTTCTTTATGAATTTGAGCAATTGTACTTCTACAGGTGTCCTTCAAAGCAACCTGCAGCTAGCAGCAGCAAAGGTCCACTTAAGAGGAAGCAGGATTCAATGGCTAGTTTTTCTCAATTAATGGATAGTGAATATGGTCAGAAGGTGACAAAGATGTGTGAGGACTGCTCTTGCCAAATGAAAGGGTCTGGTTTTGTAGAACAACCAGTGATTCTTCCTCAAATGACAAAGAAACCAAGAAACCAAGTAACAAAGAAACGGCCAGGTGCTCCAGGAGGAAGGAATGCATATCATATATTCCTCAAGAAGGAATGTGCTCGATTGAGAGCTTGTAATCAGGCCTCAGATGGCCCAAAAACCCTAAGAATGGCTGTTGATGCATGGAAGAAGATGTCTGAGATTGAGAAACAGCCATATGTGGAGGAAAGCAAGAAGAACAAGGAAAAATTTAAGAAAGCAATGATCACTAGCAATAAACAGCAGAACATGGAAGAGAAGGGGCCAAGTGTGTGTGGTGGTGACTACTATGTAACTTCACAACCTGAGGCAGATAATTCCCTTGTCAATAAAGCGGCAGTCAACTTAGCTCTTAAAATGACTGAAAAGGATCCTTTACTCCTGATGGACTGGGATGCTTGTTGTTCACTAGATTTTCCAACTGGGGAACAAGAGTAA 1083 0.4294 MLEPQINMQGQEDKKKTMLPSPSHTKVRGFQSLVEPATNATASSSTAAGKLYSPHHSDSDTFYSKLTELLDSSGLSLIFNVQETLLDLHLFYLEVTRRGGYHQVGREKKWGEVVSALKLEGNNTKLSAQVEKLYAHLLYEFEQLYFYRCPSKQPAASSSKGPLKRKQDSMASFSQLMDSEYGQKVTKMCEDCSCQMKGSGFVEQPVILPQMTKKPRNQVTKKRPGAPGGRNAYHIFLKKECARLRACNQASDGPKTLRMAVDAWKKMSEIEKQPYVEESKKNKEKFKKAMITSNKQQNMEEKGPSVCGGDYYVTSQPEADNSLVNKAAVNLALKMTEKDPLLLMDWDACCSLDFPTGEQE. 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06499 360 ProSiteProfiles ARID domain profile. 56 146 IPR001606 GO:0003677
Seca8g06499 360 SMART bright_3 57 147 IPR001606 GO:0003677
Seca8g06499 360 CDD HMG-box_SF 230 276 - -
Seca8g06499 360 Pfam HMG-box domain 229 293 IPR009071 -
Seca8g06499 360 SUPERFAMILY HMG-box 209 290 IPR036910 -
Seca8g06499 360 SUPERFAMILY ARID-like 57 148 IPR036431 GO:0003677
Seca8g06499 360 Gene3D - 42 166 IPR036431 GO:0003677
Seca8g06499 360 SMART ARID_2 53 142 - -
Seca8g06499 360 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 226 294 IPR009071 -
Seca8g06499 360 Gene3D High mobility group box domain 218 306 IPR036910 -
Seca8g06499 360 Pfam ARID/BRIGHT DNA binding domain 59 142 IPR001606 GO:0003677
Seca8g06499 360 MobiDBLite consensus disorder prediction 1 25 - -
Seca8g06499 360 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 52 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06499 Seca-Chr8 159421294 159424233 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06499 86 174 ARID Transcription Factor Family AT1G76110 37.363 5.41e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Seca8g06499 ARID 3.4e-12 CL0123