Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06496 ATGGGCTGGCCCAAACAAAAAACTCAGTTCGCGAAAGTTCTTTTCAGAGTCGCCATTACCCACCTCGTCTCTGGCCATAATCTATTGTTTTGTTTGTTCACTTCTCGTGGTTTCTCTCTGCTCTGTCGTGTCAAGTGCACTTCACCAGCACAGCACAGTATGGATTTCCAGGGATTCTTAAACGACTTGCAGGATTGGGAACTTTCTAGAAAGGACAAAGCACGAAAAGTGAAGTCACAAAAGGAAAATGGTTCATCTTCTCGAAATACTGGATCAGTGGGTGCGGAGAAGGCATCAAGAGGAGATACTATTTCTTCAGGACAGTATGGTTTCTCAAGAAACAATGATCCTTTCAGTCGTGTGCGTAGTAGTTTTGTTCCTGAAGATGTTCCTGATGCTGCTTCCGAGAAAGATCTGGGTAATGAGTTTTTCAAACAGAAGAAGTTTAAGGAAGCTATCGACTGCTATTCAAGGAGCATTGCCTTATCACCAACAGCTGTAGCATATGCAAATAGGGCAATGGCCTATATCAAGCTTAGAAGATTCCAAGAGGCTGAGGATGACTGTACAGAGGCCTTAAATCTTGATGATCGTTACATAAAAGCATACTCACGCCGAGCAACAGCCAGAAAAGAACTTGGGAAAATTAAAGAATCCATGGAAGATGCGGAGTTTGCCTTGAGGTTGGAACCTAACAATCAAGAAATCAAGAAACAGTATGCTGATGCTAAGTCTTTGTATGAGAAAGGAATTCTTCAGAAAGCATCTGGAGCACTAAGAAGCAGTGTCCAGGGAGCTCAAAAATGGGGAAAGTCAGAGACAAAAGTTAATGGAGGCAGAATCCACTCCATTTCACATGATACTCAAAAGTCAGGGCCATCTGAAGTTCATCATCACAATAAGGGTAATGAGCGGCAAATTCCTGCTAAAGAATCATTCTTAATGGAGGAGACTGATAACAGGGATACAAAAGCCAGAAGCAGGACTCAAGGACAAGAAGGGGATGGTTCTAAGGAAGTTTCTAGTTCAAGCAACAGTTTGGAGCAGAGAAATCACAGTACTAGAAAGCTAGAAATGAAAACATCAATTCAACAGCTTGCTTCTCGTGCAGCTTCTCGAGCCATGGCTGAAGCTGCTAAAAACATAACACCACCAACTACCGCTTATCAATTTGAGGCCTCTTGGAGAGGGTTTTCAGGTGATCTTGCTTTGCAGGCTCGTCTATTAAAGGCCATATCTCCCCATGAATTACCGAAAATATTCAAAAATGCCTTATCATCTACCCTGCTAATTGAGATCATCAAGTGTGTTACATCCTTTTTCACGTAA 1329 0.4229 MGWPKQKTQFAKVLFRVAITHLVSGHNLLFCLFTSRGFSLLCRVKCTSPAQHSMDFQGFLNDLQDWELSRKDKARKVKSQKENGSSSRNTGSVGAEKASRGDTISSGQYGFSRNNDPFSRVRSSFVPEDVPDAASEKDLGNEFFKQKKFKEAIDCYSRSIALSPTAVAYANRAMAYIKLRRFQEAEDDCTEALNLDDRYIKAYSRRATARKELGKIKESMEDAEFALRLEPNNQEIKKQYADAKSLYEKGILQKASGALRSSVQGAQKWGKSETKVNGGRIHSISHDTQKSGPSEVHHHNKGNERQIPAKESFLMEETDNRDTKARSRTQGQEGDGSKEVSSSSNSLEQRNHSTRKLEMKTSIQQLASRAASRAMAEAAKNITPPTTAYQFEASWRGFSGDLALQARLLKAISPHELPKIFKNALSSTLLIEIIKCVTSFFT. 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06496 442 SMART tpr_5 200 233 IPR019734 GO:0005515
Seca8g06496 442 SMART tpr_5 167 199 IPR019734 GO:0005515
Seca8g06496 442 SMART tpr_5 133 166 IPR019734 GO:0005515
Seca8g06496 442 MobiDBLite consensus disorder prediction 72 112 - -
Seca8g06496 442 Pfam Potential Monad-binding region of RPAP3 384 441 IPR025986 -
Seca8g06496 442 SUPERFAMILY TPR-like 131 247 IPR011990 GO:0005515
Seca8g06496 442 MobiDBLite consensus disorder prediction 83 112 - -
Seca8g06496 442 ProSiteProfiles TPR repeat profile. 133 166 IPR019734 GO:0005515
Seca8g06496 442 MobiDBLite consensus disorder prediction 291 333 - -
Seca8g06496 442 Pfam Tetratricopeptide repeat 166 196 IPR001440 GO:0005515
Seca8g06496 442 Pfam Tetratricopeptide repeat 137 165 IPR001440 GO:0005515
Seca8g06496 442 ProSiteProfiles TPR repeat profile. 200 233 IPR019734 GO:0005515
Seca8g06496 442 PANTHER OS05G0129900 PROTEIN 50 442 - -
Seca8g06496 442 MobiDBLite consensus disorder prediction 262 359 - -
Seca8g06496 442 MobiDBLite consensus disorder prediction 334 350 - -
Seca8g06496 442 Gene3D Tetratricopeptide repeat domain 125 231 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06496 Seca-Chr8 159353835 159359947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06496 137 203 U-box Gene Family AT3G07370 41.176 1.59e-09 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06496 K23002 - gmx:100784528 582.022
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06496 8 159353835 159359947 Seca8g06496 8 159353835 159359947 ECH