Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06493 ATGATGGAAGATGTTTACAGGTTGAACCCTCCTCTACTATCTTCTTCTTGTTCAGAGGATCTTGTTATTAGAGATAGAGATAGCAACGTTAACGTGTCTGCAGCTACTTGTACTTCTGAATTGCATCTGGGTAATAATAACTACCTTCACGATCAGATGCTCAAGAACCAGATCGCTTCTCACCCTCTTTATTCAAATCTACTATCTGCTTATATAGAATGCCAAAAGGTTGGAGCACCGACAGAACTGGTGTCCCTTCTTGAAGAAATAGCCCGTGAAAATCACCCCACGGACACTAGTACTCTTCGTCAGAATATTGGAGATGATCCTCACCTTGATCACTTCATGGAATCATACTGTGAAGTTCTTCGTAGATATAAAGAGGAGTTGTCAAAGCCCTTCAACGAAGCCACCTTGTTTTTGTGTAATATTGAATCACAACTCACCGACCTTTGTAAGGGGACACTAACAATCTCATCCAATAACAATCACCGCTCAGATCATGAGGTAGGTGGGACTTCAGAGGATGAATTAAGTTGTGGGAAAGGGGAAGCAGTTGAAGGTCACGAATCTTGTGGCACACGTAATCCAGGTGATCAAGAGCTTAAAGAAATGCTCCTTCGTAAGTATGGTGGTTATCTTAGCAGCTTGAGAAAGGAATTTCTAAAGAAAAGGAAAAAAGGTAAGCTACCTAAGGATGCAAGGAAAACACTCATGGACTGGTGGAACACCCACTATAGGTGGCCTTATCCTACGGAAGAGGAGAAATTGCAGCTATCAGAAATGACTGGACTTGATCAAAAGCAGATCAATAATTGGTTCATCAATCAGAGGAAACGGCATTGGAAACCATCTGAAGATATGCGATTTGCCATTATGGAAGGTGTAAGTGGCAGCGGCATAGGAGGACCCATGTAA 918 0.4216 MMEDVYRLNPPLLSSSCSEDLVIRDRDSNVNVSAATCTSELHLGNNNYLHDQMLKNQIASHPLYSNLLSAYIECQKVGAPTELVSLLEEIARENHPTDTSTLRQNIGDDPHLDHFMESYCEVLRRYKEELSKPFNEATLFLCNIESQLTDLCKGTLTISSNNNHRSDHEVGGTSEDELSCGKGEAVEGHESCGTRNPGDQELKEMLLRKYGGYLSSLRKEFLKKRKKGKLPKDARKTLMDWWNTHYRWPYPTEEEKLQLSEMTGLDQKQINNWFINQRKRHWKPSEDMRFAIMEGVSGSGIGGPM. 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06493 305 SMART KNOX1_2 52 96 IPR005540 GO:0003677|GO:0005634
Seca8g06493 305 ProSiteProfiles ELK domain profile. 201 221 IPR005539 GO:0003677
Seca8g06493 305 SUPERFAMILY Homeodomain-like 223 293 IPR009057 -
Seca8g06493 305 Gene3D - 219 292 - -
Seca8g06493 305 ProSitePatterns 'Homeobox' domain signature. 259 282 IPR017970 GO:0000981|GO:0006355
Seca8g06493 305 Pfam KNOX1 domain 54 95 IPR005540 GO:0003677|GO:0005634
Seca8g06493 305 Pfam KNOX2 domain 106 152 IPR005541 GO:0003677|GO:0005634
Seca8g06493 305 SMART ELK_2 201 222 IPR005539 GO:0003677
Seca8g06493 305 CDD homeodomain 233 285 IPR001356 GO:0003677
Seca8g06493 305 SMART HOX_1 223 288 IPR001356 GO:0003677
Seca8g06493 305 Pfam ELK domain 201 222 IPR005539 GO:0003677
Seca8g06493 305 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 56 291 - -
Seca8g06493 305 SMART KNOX2_2 102 153 IPR005541 GO:0003677|GO:0005634
Seca8g06493 305 ProSiteProfiles 'Homeobox' domain profile. 221 284 IPR001356 GO:0003677
Seca8g06493 305 Pfam Homeobox KN domain 241 280 IPR008422 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06493 Seca-Chr8 159321689 159325837 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06493 28 299 Homeobox Transcription Factor Family AT1G23380 50.542 6.44e-83 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Seca8g06493 KNOX2 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06493 - - gmx:100786114 424.091
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06493 8 159321689 159325837 Seca8g06493 8 159321689 159325837 ECH