Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06470 ATGTCGTTACGTCCAACCGGCAACTCGAAGACCGATAACCGCCGGCATCGATACAAGGTGGCGGTGGATGCGGAAGAAGGCCGCCGCCGCCGAGAGGACTCCATGGTGGAGATCCGTAAGAACCGTAGGGAAGAGAGTTTGCAGAAAAAGAGGCGCGAGGGTCTCCAACCTCAGCAGATGCCTCCCACTATTCACTCTACTGTGATAGAGAAGAAGTTTTTTTCTATCTCGCTGCAGCTGGAACACCTACCAGCTATGGTTGCAGGTGTTTGGAGTGATGATAACAATCTGCAGCTTGAGGCAACGACTCAGTTTCGGAAGCTGCTTTCAATTGAACGTAGTCCACCGATTGAGGAGGTTATACAGTCTGGTGTTGTTTCTCGTTTTGTGGAGTTTCTGATGAGGGAAGACTTTCCGCAGTTGCAGTTTGAGGCAGCTTGGGCTTTGACAAATATAGCCTCGGGAACATCTGAAAACACCAAGGTGGTAATTGATCACGGGGCTGTCCCAATTTTTGTAAAGCTCCTTGCTTCTCCTAGTGATGATGTCCGTGAACAGGCAGTGTGGGCATTAGGAAATGTTGCTGGGGATTCTCCTAGATGCCGTGATCTTGTTCTCAGTCATGGGGCTTTGCTTCCTTTGTTGGCACAATTAAATGAACATGCCAAGCTTTCTATGCTTAGAAATGCTACCTGGACACTTTCAAACTTCTGCAGGGGCAAGCCACAGCCTCCTTTTGATCAGGTTAAACCTGCACTTCCTGCTCTTGCCCGTCTTATCCATTCAAACGATGAAGAGGTCTTGACTGATGCTTGTTGGGCACTTTCATATCTTTCTGATGGTACAAATGATAAAATCCAAGCTGTAATTGAAGCTGGTGTTTGTCCCCGACTTGTTGAGCTCCTAATGCACCAATCTCCTTCAGTGCTAATTCCTGCTCTTCGTACTGTTGGAAATATTGTCACCGGAGATGATATGCAAACTCAGGTTATCATCAACCATCAGGCTCTTCCTTGCCTTTTGAATCTGTTGACCAATAATTATAAGAAAAGCATCAAGAAGGAAGCTTGTTGGACCATATCAAACATCACAGCTGGGAATAAACAGCAGATTCAGGCTGTGATTGAGGCTAATATAATTGGTCCTTTGGTGAACCTGCTTCAAAATGCTGAGTTTGATATTAAGAAAGAGGCTGCTTGGGCTATCTCAAATGCTACGTCTGGTGGATCTCATGAACAAATCAAGTACCTAGTAAGTCAAGGGTGTATTAAGCCCTTGTGTGATCTTCTTATCTGTCCTGATCCTAGGATCGTGACAGTTTGTCTGGAAGGCCTTGAAAACATCTTGAAGGTAGGAGAAGCTGATAAAAATATAGGCAATACTGGTGACGTGAATCTATATGCCCAAATGATTGATGATGCTGAGGGGTTGGAGAAAATTGAGAACCTCCAGAGTCATGACAACGCTGAGATTTATGAAAAGGCTGTGAAAATTCTTGAGACATACTGGTTGGAGGAAGAAGATGAGACTATGCCTCCAGGGGATGCTTCTCAACCAGGATTCAACTTTGGAAGCACTGGGGTTCCTGCGGTGCCTTCTGGTGGATTCAACTTTAATTAG 1620 0.4549 MSLRPTGNSKTDNRRHRYKVAVDAEEGRRRREDSMVEIRKNRREESLQKKRREGLQPQQMPPTIHSTVIEKKFFSISLQLEHLPAMVAGVWSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVSRFVEFLMREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLASPSDDVREQAVWALGNVAGDSPRCRDLVLSHGALLPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFDQVKPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLMHQSPSVLIPALRTVGNIVTGDDMQTQVIINHQALPCLLNLLTNNYKKSIKKEACWTISNITAGNKQQIQAVIEANIIGPLVNLLQNAEFDIKKEAAWAISNATSGGSHEQIKYLVSQGCIKPLCDLLICPDPRIVTVCLEGLENILKVGEADKNIGNTGDVNLYAQMIDDAEGLEKIENLQSHDNAEIYEKAVKILETYWLEEEDETMPPGDASQPGFNFGSTGVPAVPSGGFNFN. 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06470 539 Pfam Importin beta binding domain 14 103 IPR002652 GO:0006606|GO:0061608
Seca8g06470 539 PIRSF Importin_alpha 5 538 IPR024931 GO:0005737|GO:0006606|GO:0061608
Seca8g06470 539 Gene3D - 81 504 IPR011989 -
Seca8g06470 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 167 209 IPR000225 GO:0005515
Seca8g06470 539 FunFam Importin subunit alpha 81 504 - -
Seca8g06470 539 SMART arm_5 410 450 IPR000225 GO:0005515
Seca8g06470 539 SMART arm_5 282 322 IPR000225 GO:0005515
Seca8g06470 539 SMART arm_5 197 239 IPR000225 GO:0005515
Seca8g06470 539 SMART arm_5 156 196 IPR000225 GO:0005515
Seca8g06470 539 SMART arm_5 324 365 IPR000225 GO:0005515
Seca8g06470 539 SMART arm_5 367 407 IPR000225 GO:0005515
Seca8g06470 539 SMART arm_5 113 154 IPR000225 GO:0005515
Seca8g06470 539 SMART arm_5 241 280 IPR000225 GO:0005515
Seca8g06470 539 ProSiteProfiles IBB domain profile. 1 60 IPR002652 GO:0006606|GO:0061608
Seca8g06470 539 MobiDBLite consensus disorder prediction 9 52 - -
Seca8g06470 539 SUPERFAMILY ARM repeat 13 508 IPR016024 -
Seca8g06470 539 Gene3D - 13 52 IPR036975 GO:0006606
Seca8g06470 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 251 293 IPR000225 GO:0005515
Seca8g06470 539 PANTHER IMPORTIN ALPHA 13 509 - -
Seca8g06470 539 FunFam Importin subunit alpha 13 52 - -
Seca8g06470 539 Pfam Armadillo/beta-catenin-like repeat 367 406 IPR000225 GO:0005515
Seca8g06470 539 Pfam Armadillo/beta-catenin-like repeat 114 154 IPR000225 GO:0005515
Seca8g06470 539 Pfam Armadillo/beta-catenin-like repeat 156 195 IPR000225 GO:0005515
Seca8g06470 539 Pfam Armadillo/beta-catenin-like repeat 411 448 IPR000225 GO:0005515
Seca8g06470 539 Pfam Armadillo/beta-catenin-like repeat 283 321 IPR000225 GO:0005515
Seca8g06470 539 Pfam Armadillo/beta-catenin-like repeat 325 365 IPR000225 GO:0005515
Seca8g06470 539 Pfam Armadillo/beta-catenin-like repeat 252 279 IPR000225 GO:0005515
Seca8g06470 539 Pfam Armadillo/beta-catenin-like repeat 198 239 IPR000225 GO:0005515
Seca8g06470 539 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 124 167 IPR000225 GO:0005515
Seca8g06470 539 MobiDBLite consensus disorder prediction 1 60 - -
Seca8g06470 539 Pfam Atypical Arm repeat 465 511 IPR032413 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06470 Seca-Chr8 159099695 159104673 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06470 246 472 U-box Gene Family AT2G23140 23.684 4.73e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06470 K15042 - gmx:100789135 1011.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06470 8 159099695 159104673 Seca8g06470 8 159099695 159104673 ECH
Seca8g06470 8 159099695 159104673 Seca8g06470 8 159099695 159104673 PCT