Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06468 ATGATGATGCAGGGTCAAGACGGGGTTGATCTAGAAATCAACTTAAATGGAAGTAAATCTAGATATGAAGATGATGACTTGGATAATATGGTATTTAATGAGCATCAGATGGCCAAACTGAAAAAAAGTGAAGCATTCACAGTAGAAAGAGAAAAAGAGATCCAACAGGTTGTGGAATCCGTCAATGAGCTTGCTCAGATTATGAAGGATTTATCAGTACTAGTCATAGATCAGGGAACCATAGTTGATAGAATAGACTACAACATTCAGAAAGTTGCAACCACAGTTGAGGATGGCCTTAAACAGTTGCAGAAGGCCGAGAGAACTCAGAAAAAAGGAGGCATGGTAATGTGTGCTACGGTGCTTCTTATCATGTGCTTCGTTATGTTGGTTCTCTTAATCATTAAGGAAATTATTTTGTGA 423 0.3806 MMMQGQDGVDLEINLNGSKSRYEDDDLDNMVFNEHQMAKLKKSEAFTVEREKEIQQVVESVNELAQIMKDLSVLVIDQGTIVDRIDYNIQKVATTVEDGLKQLQKAERTQKKGGMVMCATVLLIMCFVMLVLLIIKEIIL. 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06468 140 PANTHER SYNTAXIN 24 125 IPR045242 -
Seca8g06468 140 SMART tSNARE_6 39 106 IPR000727 -
Seca8g06468 140 SUPERFAMILY SNARE fusion complex 36 107 - -
Seca8g06468 140 Gene3D - 32 139 - -
Seca8g06468 140 CDD SNARE_syntaxin16 49 105 - -
Seca8g06468 140 Pfam SNARE domain 80 132 IPR000727 -
Seca8g06468 140 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 44 106 IPR000727 -
Seca8g06468 140 ProSitePatterns Syntaxin / epimorphin family signature. 50 89 IPR006012 GO:0005484|GO:0006886|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06468 Seca-Chr8 159087225 159088667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06468 1 129 SNARE and Associated Proteins AT3G05710 75.969 4.26e-71 214
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06468 K08489 - gmx:100789659 251.521
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca8g06468 8 159087225 159088667 Seca8g06468 8 159087225 159088667 ECH
Seca2g05086 2 137351434 137356130 Seca8g06468 8 159087225 159088667 ECH