Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06467 ATGGCGACGAGGAATCGCACTTTGCTTTTCCGAAAACACAGAGATGCATTGAAGAGTGTTCGCGTTCCGTCCTCCTCTTCGCCGTCGTCCACCGCTTCCGCCGGTGGCCCCGTCATCGAATTGGTCAGCACCTCGCTTCTCAATCCCAATCGCTCTTACGCTCCGCTTAGTACCGAGGATCCCGGTAATTCGAGCAAGGGTCCAAATCCAATTACTGTGGGGTTACCTCCAGCGTGGGTGGATTTATCTGAAGAAATATCAGCAGATGTGCAACGTGCGCGCACAAAAATGGCAGAGTTGGCTAAGGCTCATGCAAAGGCTTTAATGCCATCATTTGGAGATGGTAAGGAAGACCAACGTGCTATTGAGTCTCTAACACACGAGGTAACTGACTTAATCAAGAGATCAGAGAGGAGACTGCGGAGACTTTCTGCTGCTGGGCCTTCTGAGGATTCCAATGTCAGGAAAAATGTCCAGCGTTCTCTTGCTACTGACCTTCAGAACCTCTCTGTAGAGCTTCGCAAGAAACAATCAACTTATTTGAAGCGCCTCAGGCTGCAAAAAGAGGTGAGGGAAAAGCTCCTTTTTTTTTTACATTTTTTTCCTTGA 609 0.486 MATRNRTLLFRKHRDALKSVRVPSSSSPSSTASAGGPVIELVSTSLLNPNRSYAPLSTEDPGNSSKGPNPITVGLPPAWVDLSEEISADVQRARTKMAELAKAHAKALMPSFGDGKEDQRAIESLTHEVTDLIKRSERRLRRLSAAGPSEDSNVRKNVQRSLATDLQNLSVELRKKQSTYLKRLRLQKEVREKLLFFLHFFP. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06467 202 Coils Coil 83 103 - -
Seca8g06467 202 SUPERFAMILY t-snare proteins 74 193 IPR010989 GO:0016020|GO:0016192
Seca8g06467 202 SMART SynN_4 70 185 IPR006011 GO:0016020
Seca8g06467 202 MobiDBLite consensus disorder prediction 50 70 - -
Seca8g06467 202 Gene3D - 76 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06467 Seca-Chr8 159084446 159086793 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06467 1 189 SNARE and Associated Proteins AT3G05710 77.889 5.14e-105 303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06467 K08489 - gmx:100796741 316.62