Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca8g06465 ATGGTAAGGGGAGGAAAGTTTAGTGGCAAAAGCAATTTCAGGAAAAAAGGTCGGTCAAAGGAGGGAAGTTCTGATGATTCTGATGAGGACTATGTGGTCTCAGATGAAGGTAGAGACGTCTCTGACTATTATTGCTCCTCGTTGGATGGATGTGCATCAGAGGAGAGTTTTGATAGTTTTATTGAGGATGAGGAATTTCAAGGAGTGAGGAATTCTAATAGATCCAAGGCAAAAATTCGCATTCGTGGTGGTCGGAAGAAAAATGCAAGTAAAAACTCCCGAAAGAGGGGAAGGATTACATATGAAAAACAAGAAGAAGAGGAGGAGGATGAAGAGGAAGAGGAAGAGGAAGAGGGGGTGGAGGAAATTCAAGGAATGTGGACTTCCATTAGATCAAAGGTCCAAAATGGTGTTTGTGGTAAGCGAAAAAATGCAAGTAAAACCTCACAAAAGAGGGGAAGGATATCACATGCAGAACAACTAGAGGAGGAGGAGGAGGAGGAGGAGATAGAGGAGAAAAAGGAGAGGGAGCAAGAAGAGGAGGTGGAGAGAGATGCAGATGGGGACGAGGAGGAAGAGGGAGAGGGGGATGGAGATGAGGATTTTGACTTTGATGATGAGGATGATGAATTTACACCAGAGGAAGAAGATTATTCAGATGACGAAGAAGAAATGAGTGGGAGGCAGAAGAAAAATAATGGCATGAAAATGGGCAAGAAGGTGTTGAAGAAAAAGGCCTCTGTGGTTTCTACCAAAGGTGGAAAAAGGCGAAGTTCTAGAGCATCAAAGAAGCCCATGAGAACCAAACCAAGAAAGAATGGGAGGTTAAGGAGGAAAGTAAAATGTGACAATGAAGGTGATTTTATAGATAATGGCCCAGCCATCAGGACAAGTAGGAAAAAACAGGCCCGAAAGAGGAGAAGGATGATTCTTTCAGATTCAGATTGTGTGTCTTTGGGATCAACTGATTTTGAGTATACCATATCTGAAGAAGAGAGAGAACAGGTGAGAGAAGCCAAGAAATTGTGTGGAAGCTTGAGAAATAACTTGAGGAGTTCATCCCTTCAAATAAACAATGAAGAGGCTGGAGTCCAAGAAGATCTACATCTGCAACAGAAGCCCCCAGGTCGGAAGGGTAAGGAGAAGATAGAAGAACCTCAAGGAAGAAAGGGTAAGGAAAAGGTGGAGAACTTAAAAAGTGAGGTGGGAAAGCAGGTGTGTGGAATTTGTTTGTCTGAGGAAGATAAAAGAAGAGTAAGGGGAGTACTAAATTGTTGCACTCACTATTTTTGTTTTGCTTGCATTATGGAGTGGGCAAAGGTGGAATCTCGCTGCCCTTTGTGTAAGCAGAGATTCAAAACAATCAGTAAGCCTGCACGATCAACGATGGGAATTGATTTAAGAGAAGTGGTGATACAAGTCCCTGAACGAGACCAGGTTTATCAGCCCTCTGAAGAAGAACTCAGGAGCTATATTGATCCATATGAGTATGTTATTTGTTCAGAGTGTCATCTAGGTGGAGATGATGGCCTTATGTTACTCTGTGATATCTGTGATTCCCCTGCACACACATATTGTGTTGGTTTAGGGCGGGAAGTTCCTGAAGGTAATTGGTATTGTGATGGCTGTAGACCAGTTGCTTTGGGATCTTCAAGCTCCCAAGTTCAAGAAGCTGAACCAAGAGTGACAATCCAGAGCCTGCCTGCTAGACCATCCCCTCTTCTACATGTACGAGAAACTATAGACCTCAACTTGATTTCTTCACCCCTTGCAGTTTCCAATCAAGGGTTTGTGCATCTTTCATCTTCTAGATTTATTGGCAGAAGTGTCGATGGAGCTTCTCCAGTATCTGGAGGGGCACCAACTTTATCAGAGAGACGCTGGATACAGCGTCAAATTCATCAGCTACGTTCAGTAGATAGGATGACTACTACAACTGGCAGAACTAATAGTATTTCAGCTATCAGTTCAACTAGTAACTTGTATAGCTCTCAAATTGATCAATGTAGGGAAACAGCCCCTCAAAATACAAGGACACAGGATGTGGGAACATCATACCACACATTCTTTGAAGAGAGATTATACAGCAATATTTCTCCATTAATGCAGAATGGGACATCATGGCCTGGACATGTGGGGACACCTTCAGTACCTGATTGTGAACAAGTCCATCAGTTCAGCAGATCAAACATGGTCACTGATGGTAGCTCATCTCCTGCCGTAATAGAAGACTTTCACATTGTGAAGGAGCAGGTGCACTCAATGGTTAAAAGCCACCTAAAGAGCCTGTCTCAAAATATTGATTTAGGCCACAGTACTCTCAAGGACATTGCAAGGAGTTCTATGCACACCATACTAGCAGCTTGTGGTCTTGAGCACATGAAGAATGAGGTTCGCACTGTGCCTCCCCCATCCGTCTGTCCGCACATTGAACTGACGGCTGGTGCGCAATCGAGTCTGATTAATGGTTGCTGCTCATCTTGCTTTGATTCTTTTGTAGGAGATGTGGTGAAGAGGATTTTGGATACAAGAATGCCTTCCCAGTGGTTACGATTAGGTCTTTAG 2565 0.4343 MVRGGKFSGKSNFRKKGRSKEGSSDDSDEDYVVSDEGRDVSDYYCSSLDGCASEESFDSFIEDEEFQGVRNSNRSKAKIRIRGGRKKNASKNSRKRGRITYEKQEEEEEDEEEEEEEEGVEEIQGMWTSIRSKVQNGVCGKRKNASKTSQKRGRISHAEQLEEEEEEEEIEEKKEREQEEEVERDADGDEEEEGEGDGDEDFDFDDEDDEFTPEEEDYSDDEEEMSGRQKKNNGMKMGKKVLKKKASVVSTKGGKRRSSRASKKPMRTKPRKNGRLRRKVKCDNEGDFIDNGPAIRTSRKKQARKRRRMILSDSDCVSLGSTDFEYTISEEEREQVREAKKLCGSLRNNLRSSSLQINNEEAGVQEDLHLQQKPPGRKGKEKIEEPQGRKGKEKVENLKSEVGKQVCGICLSEEDKRRVRGVLNCCTHYFCFACIMEWAKVESRCPLCKQRFKTISKPARSTMGIDLREVVIQVPERDQVYQPSEEELRSYIDPYEYVICSECHLGGDDGLMLLCDICDSPAHTYCVGLGREVPEGNWYCDGCRPVALGSSSSQVQEAEPRVTIQSLPARPSPLLHVRETIDLNLISSPLAVSNQGFVHLSSSRFIGRSVDGASPVSGGAPTLSERRWIQRQIHQLRSVDRMTTTTGRTNSISAISSTSNLYSSQIDQCRETAPQNTRTQDVGTSYHTFFEERLYSNISPLMQNGTSWPGHVGTPSVPDCEQVHQFSRSNMVTDGSSSPAVIEDFHIVKEQVHSMVKSHLKSLSQNIDLGHSTLKDIARSSMHTILAACGLEHMKNEVRTVPPPSVCPHIELTAGAQSSLINGCCSSCFDSFVGDVVKRILDTRMPSQWLRLGL. 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca8g06465 854 Pfam PHD-finger 499 545 IPR019787 -
Seca8g06465 854 SUPERFAMILY RING/U-box 406 455 - -
Seca8g06465 854 MobiDBLite consensus disorder prediction 69 307 - -
Seca8g06465 854 PANTHER F18C1.6 PROTEIN 145 843 - -
Seca8g06465 854 MobiDBLite consensus disorder prediction 371 394 - -
Seca8g06465 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 487 567 IPR013083 -
Seca8g06465 854 MobiDBLite consensus disorder prediction 161 222 - -
Seca8g06465 854 ProSiteProfiles Zinc finger RING-type profile. 407 449 IPR001841 -
Seca8g06465 854 MobiDBLite consensus disorder prediction 75 94 - -
Seca8g06465 854 MobiDBLite consensus disorder prediction 361 394 - -
Seca8g06465 854 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 384 471 IPR013083 -
Seca8g06465 854 MobiDBLite consensus disorder prediction 104 122 - -
Seca8g06465 854 ProSitePatterns Zinc finger RING-type signature. 426 435 IPR017907 -
Seca8g06465 854 Coils Coil 154 192 - -
Seca8g06465 854 Pfam Ring finger domain 406 449 IPR001841 -
Seca8g06465 854 SMART ring_2 407 448 IPR001841 -
Seca8g06465 854 CDD RING-HC_Topors 405 452 - -
Seca8g06465 854 Coils Coil 94 123 - -
Seca8g06465 854 MobiDBLite consensus disorder prediction 1 36 - -
Seca8g06465 854 SMART PHD_3 499 544 IPR001965 -
Seca8g06465 854 MobiDBLite consensus disorder prediction 233 277 - -
Seca8g06465 854 MobiDBLite consensus disorder prediction 128 144 - -
Seca8g06465 854 Coils Coil 329 349 - -
Seca8g06465 854 ProSiteProfiles Zinc finger PHD-type profile. 497 546 IPR019787 -
Seca8g06465 854 SUPERFAMILY FYVE/PHD zinc finger 470 545 IPR011011 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca8g06465 Seca-Chr8 159075876 159080025 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca8g06465 494 543 C2H2 Transcription Factor Family AT3G01460 46.154 1.06e-08 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Seca8g06465 PHD 1.3e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca8g06465 - - gmx:100797448 1117.45